KEGG   Pseudomonas putida DLL-E4: DW66_4099
Entry
DW66_4099         CDS       T03439                                 
Name
(GenBank) DNA polymerase III subunits gamma and tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
ppud  Pseudomonas putida DLL-E4
Pathway
ppud03030  DNA replication
ppud03430  Mismatch repair
ppud03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppud00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DW66_4099
   03430 Mismatch repair
    DW66_4099
   03440 Homologous recombination
    DW66_4099
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppud03032]
    DW66_4099
   03400 DNA repair and recombination proteins [BR:ppud03400]
    DW66_4099
Enzymes [BR:ppud01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     DW66_4099
DNA replication proteins [BR:ppud03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     DW66_4099
DNA repair and recombination proteins [BR:ppud03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     DW66_4099
SSDB
Motif
Pfam: DNA_pol3_delta2 DNA_pol3_gamma3 DNA_pol3_tau_5 AAA RuvB_N AAA_5 AAA_22 ResIII AAA_14 TIP49 AAA_30 AAA_19 PIF1 AAA_16 AAA_18 AAA_2 TsaE nSTAND3 AAA_7 HasA SKI Rad17 Herpes_Helicase zf-CXXC AAA_24
Other DBs
NCBI-ProteinID: AHZ78604
UniProt: A0A059V431
Position
complement(4483877..4485949)
AA seq 690 aa
MSYQVLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAK
CLNCETGITSTPCGTCSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRF
KVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMSP
ERVVEHLSHVLAAENVPFEPDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVLAADVRAM
LGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQGPDWAGVLAEMLNVLHRVAIAQALPE
AVDNGQGDRERVLALASALPAEDVQFYYQMGLIGRRDLPLAPDPRGGFEMVLLRMLAFRP
ADTDDAPKPVLKPVGISQATADPATPVAAPAVAVAPPAAAVVAPVAPVAEQQVQAPAPVE
PAPQPVVEPVVAAEPAPVSEPEPAPEPVAEVVDLPWEEPAPTPAPVVAEPAPAPAPAAVP
TPAPAAPAHDDEPPFDPSAYAAVGMDRDDEPPLDEDYYGGESDPVGFSYLDELAEHVQEE
APKPAAVPLPAAKPATGLALQWLELFPQLPVSGMTGNIAANCTLIAVDGDDWLLHLDPGQ
GALFNATQQRRLNEALNQHLGRTLNLRIELILPEQETPAQAAARKRAERQQDAVTSIEQD
PLIQQMIKLFGAKVRQDTIEPVEALVNQGQ
NT seq 2073 nt   +upstreamnt  +downstreamnt
atgagttatcaggttcttgcacgtaaatggcgtccgcgctcgttccgcgaaatggtcggc
cagacccatgtgctcaaggccttgatcaatgccttggacaaccagcgcctgcaccatgcc
tatctgttcactggtacccggggtgtgggcaagacgaccattgcccgtatcatcgccaag
tgcctgaactgcgaaaccggcatcacctcaacgccctgcggtacctgttcggtgtgccgg
gagattgacgaaggccgtttcgtcgacctgatcgagatcgacgccgccagccgcaccaag
gtcgaggacacgcgcgaactgctcgataacgtgcagtacgccccgagtcgtgggcgcttc
aaggtctacctgatcgacgaagtgcacatgctctcgactcactcgttcaacgccttgctc
aagacgctggaagagccaccgccctacgtcaagttcatcctcgccaccactgacccgcag
aaactgccggccaccatcctgtcgcgctgtctgcagttctcgctgaagaacatgagcccg
gagcgggtggtcgagcacctcagccatgttctggccgccgagaacgtgccgttcgagccg
gatgccctgtggctgctggggcgcgcggccgatggctcgatgcgcgacgccatgagcctg
accgaccaggccatcgcctttggcgaaggcaaggtactggccgccgatgtgcgggccatg
ctcggcagccttgatcatggccaagtctacggggtgctgcaggcgttgctcgaaggcgat
gcccgggccttgctcgaggccgtgcgcaacctggccgagcagggcccggactgggctggc
gtgctggccgagatgctcaatgtgctgcaccgcgtggccattgcccaggcgctgccggaa
gcggtggacaacggccagggcgaccgtgagcgggtgctggcgctggcctcggcattgcca
gccgaggacgtgcagttctattaccagatgggcctgataggccgccgtgacctgccactt
gcgccggacccgcgcggcggcttcgaaatggtcctgctgcgcatgctcgcgttccgcccc
gccgacaccgacgacgcgccgaagccggtactaaagccagtggggatcagccaggccaca
gctgatcctgcaacaccggtggcagcgccggcggttgccgtggcgccgccggccgctgct
gtcgtggcgccggttgcaccggttgccgagcaacaagtgcaggcgcccgcaccggtcgaa
ccagcgccacagccggttgtcgagcctgtggtggcagctgagcctgccccggtcagtgaa
cctgagccagcaccagaacccgtggcagaggtggttgacctgccatgggaagagcccgcg
ccaacgcccgcaccggtagtggccgagcctgcgccggctcctgcaccggccgctgtgccc
acgccggcacctgccgccccggcacacgacgacgagccacccttcgacccgtccgcctat
gccgccgtgggcatggaccgcgacgatgaaccgccactggacgaagactattacggcggc
gaaagcgacccggtcggcttcagctacctggacgaactggccgaacacgtccaggaagaa
gcacccaagccggcagccgtaccgctgcccgcagccaagccggctaccggcctggccctg
caatggctggaattattcccacagttgcctgtatccgggatgacaggcaacatcgcggca
aactgtacgttgattgccgtcgatggcgacgactggctgctgcacctggaccctggccag
ggtgcgctgttcaacgcgacccagcaacggcgccttaacgaagcgctcaaccagcacctg
gggcgcacgctgaacctgcgcatcgagctgatcctgcccgagcaggaaaccccggcccag
gcagcggcgcgcaaacgcgccgagcgccagcaggacgcggtcacctcgatcgagcaggat
ccgttgatccagcagatgatcaagttgttcggcgccaaggtgcggcaggatactattgag
cctgtagaagccctggttaatcagggccagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (25)   
   Pfam (25)   
All databases (38)   

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