KEGG T02389: B479

Pseudomonas putida HB3267: B479_16495

Entry

B479_16495        CDS       T02389

Name

(GenBank) DNA topoisomerase

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

ppuh Pseudomonas putida HB3267

Brite

KEGG Orthology (KO) [BR:ppuh00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppuh03032]
    B479_16495
   03400 DNA repair and recombination proteins [BR:ppuh03400]
    B479_16495
Enzymes [BR:ppuh01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     B479_16495
DNA replication proteins [BR:ppuh03032]
Prokaryotic type
  DNA Topoisomerases
   B479_16495
DNA repair and recombination proteins [BR:ppuh03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      B479_16495

SSDB

Motif

Pfam:

Topoisom_I Top1B_N_bact

Other DBs

NCBI-ProteinID:

AGA74191

Position

3639702..3640724

AA seq 340 aa
MLDCPLPRTLHYVDDSQPGLTRRRWRERFIYLDADGQRVRDSDTLARIAALAIPPAYTEV
WICADPQGHLQATGRDARGRKQYRYHAQWREIRDQHKYGRMLAFAQALPKLRAQLHDHLA
RPGLDREKVMALVISLLDHTLIRIGNQRYLRDNQSYGLTTLRNRHVEVKGSSIRFQFRGK
RGVEHNVSLNDRRLANLLKRCMELPGQALFQYLDDDGQRHSVGSSEVNQFLQQLTGADFT
AKDYRTWAGSSLALDLLRPLAWEPESEAKRQVAAIVRQVASRLGNTPAVCRRCYIHPAVL
EHYALGRLANLPKNRVRKGLDREEVALLLFLQALEEQDDH

NT seq 1023 nt +upstreamnt +downstreamnt
atgcttgactgccccctgccgcgcaccctgcactacgtcgacgacagccagccgggcctg
acccggcggcgctggagagagcgcttcatctacctggatgccgacggccaacgagtgcgc
gacagcgatacccttgcccgcatcgctgcactggcaatcccaccggcctataccgaggtg
tggatctgcgccgacccgcaaggccacctgcaagccacaggtcgcgatgcccgtggccgc
aagcaataccgctaccacgcgcagtggcgcgaaatacgcgaccagcacaagtacgggcgc
atgctggcgtttgcccaggccctgccgaaattgcgcgcacagctgcacgaccaccttgcc
cggccaggcctggaccgggaaaaggtgatggcgctggtgatcagcctgctggaccacacc
ctgatccgcatcggcaaccagcgctacctgcgtgacaaccagtcctatggactgaccacc
ctgcgcaaccgccatgtcgaggtgaagggcagcagcatccgcttccagttccgcggcaag
cgcggcgtcgagcacaacgtcagcctcaacgatcggcgcctggccaacctgctcaagcgc
tgcatggaactgcccggccaagcgttgttccagtacctggacgacgacggccagcgccat
agcgtcggctccagcgaggtcaaccagtttctgcagcagctgaccggtgccgacttcacc
gccaaggactaccgcacctgggccggtagcagcctcgccctggacctgctgaggcccttg
gcctgggagcccgagagcgaagccaagcgccaggtcgccgccatcgtccgtcaggtagca
tcacgcctgggcaatacaccggcagtgtgcaggcgctgttacattcacccggctgtactt
gaacactatgccctggggcgcctggccaacttgccgaagaaccgtgtgcgcaaaggcctg
gaccgtgaagaagtagccttgctgttatttcttcaggcactcgaggaacaggatgaccat
taa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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