KEGG   Pandoraea pulmonicola: RO07_18505
Entry
RO07_18505        CDS       T03553                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ppul  Pandoraea pulmonicola
Pathway
ppul03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppul00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RO07_18505
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppul03021]
    RO07_18505
   03019 Messenger RNA biogenesis [BR:ppul03019]
    RO07_18505
Transcription machinery [BR:ppul03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     RO07_18505
Messenger RNA biogenesis [BR:ppul03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RO07_18505
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA_19
Other DBs
NCBI-ProteinID: AJC21978
UniProt: A0A378Z1J7
Position
complement(2307476..2308738)
AA seq 420 aa
MHLSELKSQHVSELLEMANGLEIENANRLRKQELMFAILKKRAKSGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GHPPEASKHKIMFENLTPLHPNKPLLLERDIRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAITANHPEAKLFVLLIDERPEEVTEMQRSVRGEVIASTFDEPATRHV
QVAEMVIEKAKRLIEMKEDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEILQKIWVLRKLIYDMDEAEAMEFLLGKIKQTKNNAEFFDLMRRGG
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgcatttatccgaacttaagtcccagcacgtctccgaactgcttgaaatggcgaacggt
ctcgaaatcgagaacgcaaaccgccttcgcaagcaggagctgatgttcgccattctgaag
aagcgcgcaaagtccggcgaaaccatctttggcgacggtacgctcgaagtgctgccggac
ggcttcggtttcctgcgctcgcccgagacatcgtatctggccagcacggacgatatctat
atcagcccgtcgcagatccgccgcttcaacctgcataccggcgacacgatcgaaggggaa
gtgcgtacgcccaaggacggcgagcgttatttcgcgctggtgaaggtcgataaagtcaac
ggccacccgcccgaggcctcgaaacataagatcatgttcgagaacctcacgccgctgcac
cccaacaagccgctgctgctcgagcgcgacattcgcggcgaagagaacgtgacgggccgc
atcatcgacatgatcgccccgatcggcaagggccagcgcggtctgctggttgcctcgccg
aagtccggcaagaccgtgatgctgcagcacattgcgcatgccatcaccgccaatcatccg
gaagccaagctgttcgtgctgctcatcgacgagcgccccgaagaagtgacggaaatgcag
cgctcggtgcgcggcgaagtgatcgcgtcgacgttcgacgaaccggccacgcgtcacgtg
caggtcgccgaaatggtgatcgagaaggccaagcgcctgatcgagatgaaggaagacgtg
gtgatcctgctcgactcgatcacgcgtctggcgcgcgcctacaacaccgtgatcccggct
tcgggcaaggtgctcaccggcggtgtggacgccaacgccctgcagcgcccgaagcgcttc
ttcggcgcggcccgtaatgtcgaagaaggcggttcgctcacgatcatcgccaccgcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaggaattcaagggcaccggcaac
atggaagtgcacctggaacgccgtctcgcggaaaagcgcgtctacccgtcgatcaatctg
aacaagtcgggcacgcgtcgcgaagagctgctcatcaagccggaaatcctgcaaaagatc
tgggtgctgcgcaagctcatctacgatatggacgaggccgaagccatggaattcctgctt
ggcaagatcaagcagaccaagaacaacgccgagttcttcgacctgatgcgccgcggcggc
tga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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