KEGG T02707: PP4

Pseudomonas putida NBRC 14164: PP4_05660

Entry

PP4_05660         CDS       T02707

Symbol

rtcB

Name

(GenBank) RNA-splicing ligase RtcB

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

ppun Pseudomonas putida NBRC 14164

Brite

KEGG Orthology (KO) [BR:ppun00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ppun03016]
    PP4_05660 (rtcB)
Enzymes [BR:ppun01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     PP4_05660 (rtcB)
Transfer RNA biogenesis [BR:ppun03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    PP4_05660 (rtcB)
Prokaryotic type
   tRNA splicing ligases
    PP4_05660 (rtcB)

SSDB

Motif

Pfam:

RtcB PRMT5

Other DBs

NCBI-ProteinID:

BAN52419

Position

644634..645839

AA seq 401 aa
MDILQVAGGKPIKLWTDGVPVEDEARQQLLNTARMPFIFKHLAVMPDVHLGKGSTIGSVI
PTVGAIIPAAVGVDIGCGMIAARTSLHARDLPDNLHGLRSAIEQAVPHGKSFGKRDQGAW
ADVPAKADKAWGQLAGRFKAITDKYPRLEKTNNRHHLGTLGGGNHFIEVCLDEADRVWFM
LHSGSRGVGNAIGNLFIELAQADMRQHLANLPDKDLAYFEEGSRHFADYVEAVEWAQEYA
RQNRELMMLAVVGAARKALGKPFEASLEAVNCHHNYVQREQHFGREVLVTRKGAVSAQKG
ELGIIPGSMGARSFIVRGLGNEESFCSCSHGAGRVMSRTKAKSRFTVEDQRRATAHVECR
KDKDVVDEIPMAYKDIDAVMRAQQALVEVVHTLRQVVCVKG

NT seq 1206 nt +upstreamnt +downstreamnt
atggatattctccaggtcgccggtggcaagccgatcaagttgtggaccgatggcgtgccg
gtcgaagacgaggcccgccaacaactgctgaacacggccaggatgccgttcatcttcaag
cacctggcggtgatgcccgacgtgcacctgggcaagggctcgaccatcggcagcgtgatc
cctacggtcggcgcgatcatccccgctgcggttggcgtggacatcggctgcggcatgatc
gccgcgcgcacctcgctgcacgcgcgtgacctgccagacaacctgcatggcttgcgcagt
gccatcgagcaggcggtgccgcatggcaagagcttcggcaaacgtgaccagggcgcctgg
gccgatgtaccggccaaggcggacaaggcctggggccagctggccgggcggttcaaggcc
attaccgacaaatacccgcggctggaaaagaccaataaccgccaccacctgggcacactg
ggcggtggcaaccacttcatcgaagtgtgcctggatgaagccgaccgcgtctggttcatg
ctgcacagcggctcgcgcggtgtgggcaatgccatcggcaacctgttcatcgagctggcc
caggccgacatgcgccagcacctcgccaacctgccagacaaggacctggcgtacttcgaa
gaaggcagccgccatttcgccgactatgtcgaagcggtggagtgggcgcaggagtacgcc
cggcagaaccgcgagctgatgatgctggccgtggtcggcgctgctcgcaaggcgctgggc
aaaccgttcgaggccagcctggaagcggtgaactgccaccacaactacgtgcagcgtgag
cagcattttggccgcgaagtgctggtgacgcgcaaaggggcggtgtcggcacagaagggg
gaactgggcatcatcccgggctcgatgggggccaggagcttcatcgtgcgtgggctgggc
aacgaggagtcgttctgttcctgcagccatggcgcaggccgggtgatgagccggaccaag
gccaaaagccgctttaccgtcgaggaccaacggcgtgccacggcgcatgtggagtgccgc
aaggacaaggacgtcgtcgacgagatcccgatggcgtacaaagacatcgacgcggtgatg
cgtgcccagcaggcgcttgtagaggtggttcataccctgcgccaggttgtgtgtgtgaag
gggtag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

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