KEGG T02357: PputUW4

Pseudomonas putida UW4: PputUW4_00604

Entry

PputUW4_00604 CDS T02357

Gene name

recD

Definition

DNA helicase/exodeoxyribonuclease V subunit alpha (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

ppuu Pseudomonas putida UW4

Pathway

ppuu03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:ppuu03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 Helicase_RecD AAA_19 AAA_11 Viral_helicase1 AAA_22 DUF2075 AAA_16 AAA_17 AAA_28 UvrD-helicase PhoH NTPase_1 AAA_25 AAA_5 DUF2423 T2SE AAA_18 AAA

Other DBs

NCBI-GI:

426407518

NCBI-GeneID:

14055838

UniProt:

K9NDZ0

Position

702723..704825

AA seq 700 aa
MNRSFADLLPTSLAAESLADLAPLSRADDLLLLLTRWVERGWLRALDKAFVAFLHELAPE
DDPLVLLAAALTSHQLGHGHVCLDLFETLKEPDFALSLPPEGDVQGGAMLLPSQLLGSLD
GAHWCKVLAASNLVALAADSRDNVRDRPLVLSGKRLYLRRYWAYERRIDLSLRERLTEHE
STPNDLLQRLTGLFGPARPGEVIDWQKLACALATRSAFSIVTGGPGTGKTTTVVRLLALL
QAPAVEAGMPLRIRLAAPTGKAAARLTESISQQVRTLKVSEAIREKIPSDVTTVHRLLGS
RPGTRHFRHHAGNRLPLDVLVVDEASMIDLEMMANLLDALPAHARLVLLGDKDQLASVEA
GAVLGDLCRDAEAGWYSPQTRQWLEAVSGESLQAGGLQEDTQGAHPLAQQVVMLRHSRRF
GEGSGIGQLARWVNQQQPEEARKLLSARSHDDVYGLSLKGEQDRTLERLLLEGHGEGPQG
YRHYLTLLRKQRPPLDSPLDDSSWTDWAREVLQAFDAFQLLCAVRKGPWGVEGLNQRVTD
ALLRARLIDSDQQWYEGRPVLMTRNDYGLGLMNGDIGIALKLPEQEGHGKQVLRVAFPRN
DGQGGVRFVLPSRLNDVETVYAMTVHKSQGSEFAHTALILPDALNPVLTKELIYTGITRA
KDWFTLIESRAGVFEEAVKRRVKRLSGLMLELKDGSELAG

NT seq 2103 nt +upstreamnt +downstreamnt
atgaatcgctcattcgccgatttgctgccgacatcgctggcagctgaaagcctggccgat
ctggcgccgctgagtcgtgccgacgatttgctgttgctgctcacgcgctgggtcgaacgt
ggctggctgcgcgcgctggacaaagcttttgtggcgtttctgcatgagctggcaccggag
gatgatccgttggtcttgctggcagccgcgttgactagccaccagttgggccacgggcat
gtctgcctcgacctgttcgagacgctgaaagaaccggacttcgccctgtcattaccaccc
gaaggtgacgtacaaggcggcgccatgctgttgccgtcgcaattgctcggatcgctggac
ggtgctcattggtgcaaggtgctggccgccagtaacctggtcgcactggccgccgacagc
cgtgacaacgtgcgtgaccgacctttggtgttatcgggcaagcgcttgtacctgcgccgc
tattgggcctacgagcggcggatcgacctttcgctacgcgagcgcctgacggaacacgag
tccacgccgaacgacctgctgcagcgcctcaccggtttgtttgggcctgcccggccgggt
gaagtgatcgactggcagaagctggcctgcgccctggcgacccgcagcgccttcagcatc
gtgacgggggggccgggaaccggcaagaccaccaccgtcgtgcgcttgctggcgttgctc
caggcgccggcggtcgaagccggcatgccattgcgcattcgcctcgccgcaccgaccggc
aaggccgcggcgcgtctgacagagtccatcagccagcaagtccggaccctgaaggtcagc
gaagcaatacgcgagaaaatcccgtcggatgtcaccaccgttcaccgtctgctgggcagt
cggcccgggacacggcatttccggcaccatgcgggcaatcgcctgccgctggatgtgctg
gtggtggacgaggcctcgatgatcgacctggaaatgatggccaatctgctcgacgccttg
ccggcccatgcacgcctcgtgctgttgggggacaaggaccaattggcttcggtagaagcc
ggtgcggtactgggggatctgtgtcgtgacgcggaggctggctggtacagcccgcagaca
cgccagtggctggaagccgtcagcggcgaaagcctgcaggccggcggattgcaggaggat
acgcagggcgctcatccactggcccaacaggtggtgatgttgcgccattcccggcgattc
ggtgagggcagtggtattggtcagctcgctcgttgggtcaaccagcagcaaccggaagaa
gcccgcaagttgttgtctgcgcgaagccatgacgatgtgtatggcttgtccctcaagggc
gagcaagaccggaccctggagcgtttgctgctcgaaggccatggtgaggggccgcagggt
tatcggcattacctgaccttactgcgtaaacaacggccgccactcgacagcccgctggac
gattcgagctggaccgactgggcccgggaggtgttgcaagcctttgacgcgttccagctg
ttatgtgccgtgcgcaaggggccgtggggtgtggagggcctgaaccagcgggtgacggac
gcgttgctcagggcacgcctgatcgacagcgaccaacagtggtacgaaggtcgccccgtg
ctgatgacccgcaacgattacgggctgggcttgatgaacggcgatattggcatcgccctc
aaactcccggagcaggagggccacggaaaacaggttttgcgtgtggcgttcccacgcaat
gacggtcagggcggcgtgcgatttgtcctgccaagccgtctgaatgatgtcgaaaccgtg
tacgccatgactgtgcataaatcccaaggctcggagttcgcgcataccgcgttgattctt
cctgacgccttgaatccggtcctcaccaaggaattgatctacaccgggattacccgggcc
aaggattggttcaccctgatcgaatcgcgcgcaggcgtatttgaagaggcggtgaaacgc
cgggtcaagcgcttgagcgggctgatgctggaactgaaggacggcagcgagctggcaggc
tga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (20)   
   Pfam (20)   
All databases (29)   

Download RDF

DBGET integrated database retrieval system