KEGG T00675: PputW619

Pseudomonas putida W619: PputW619_1516

Entry

PputW619_1516 CDS T00675

Definition

ribonuclease

Orthology

K08300

ribonuclease E [EC:3.1.26.12]

Organism

ppw Pseudomonas putida W619

Pathway

ppw03018

RNA degradation

Module

ppw_M00394

RNA degradosome

Class

Genetic Information Processing; Folding, sorting and degradation; RNA degradation [PATH:ppw03018]

SSDB

Motif

Pfam:

RNase_E_G S1

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(1671844..1675062)

AA seq 1072 aa
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPEVLNNQSSYEIAATETEEAPQPTATRTLVRQEAAVKTAPARANAPVPSAV
EEQQPAAPAAPAPSVPEPSLFKGLVKSLVSLFAGKEEPAAAPVVTAEKPATERTQRNEER
RNGRQQSRNRNGRRDEERKPREERAERTPREERQPREERAPREERAPREERAPRQPREDR
RGNREERVRELREPLDAAPAAREERQPREERAPREERAPREERAPREERAPREERAPREE
RAPREERAPREERAPREERAPREERAPREERQPRPPREERQPREAEQAAELADEQLPNEE
LQQDEQEGSDDERPRRRSRGQRRRSNRRERQRNANGELIEGSDEEGSDEQPQQHQATELG
AELAAGLAVTAAVASSNISAGAEAQANQQAERASAEAATTDNSEVAQPAEQVEAVAKAEE
IAIAPVVEQPLSEPVAAIEAGAEPVVEVAPEPVVEQAPAVEPVVVAEAPVEAPVEAPAIE
AGEVEKAQVAAEQAPAAELPAAVVETQPEVAAEPAATVVAAAPVVAEPAPVEAPAAVEAA
TVMLPNGRAPNDPREVRRRKREAEAAAKAAQEAAAAGAPTVETADEQKPHHG

NT seq 3219 nt +upstreamnt +downstreamnt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgtagccctggtggac
ggccaacgcctgtacgacctggacatcgagtccggtgcgcgcgagcagaaaaaggccaac
atctacaaaggcaagatcacccggatcgagcccagcctcgaagccgccttcgtcgacttc
ggctccgaacgtcacggcttcctgccgctgaaggaaatctcccgcgagtacttcaagaaa
gcccctgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgtggcaacaaaggcgccgccctgaccaccttcatcagcctg
gcaggccgctacctggtgctgatgcccaacaacccccgcgctggcggcatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgtgaagccctcaacggcctgaccgtgccaggc
gacatgggcctgatcgtgcgcaccgcaggccttggccgcagcagcgaagaaatgcagtgg
gacctcgattacctgctgcaactgtggaccgccatcaaggaagcatcgctggatcgcgct
gcgccgttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgatgcccaggaagaagcactgacc
ttcatccgccaggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgta
ccgctgttcaaccgcttccagatcgaaagccagatcgagaccgccttccagcgcgtcgtc
gacctgccgtcgggcggctctatcgtgatcgacccgaccgaggccctggtttccatcgac
atcaactcggcgcgcgccaccaagggcagcgacatcgaggaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgacgccggcgaaaaaccagcgcgccgtcgaagaacgggta
cgcgaagccctcgaggccgaccgcgcccgcgtacaggtcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgcccgtcgctgggcgaaagcagcggcatcgtc
tgcccgcgctgctccggcaccggcatcatccgtgatgtcgagtcgctgtccctggccatc
ctgcgcctgatcgaagaagaagccctgaaggaccgtactgccgaagtacgcgcccaggta
ccgattccggtggccgccttcctgctcaacgagaagcgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgcatcatcattctgccgaacgaccacctggaaaccccgcacttc
gaagtccagcgcctgcgcgacgacaacccggaagtgctgaacaaccagtccagctacgaa
atcgccgccaccgaaaccgaagaagcgccgcagccgaccgccacgcgcaccctggtgcgc
caggaagcagcggtcaagactgcaccggcccgcgccaacgctccggtaccgagcgctgtc
gaagaacagcagcctgccgcaccggcagccccggcacctagcgttccggagccaagcctg
ttcaaaggcctggtgaagtcgctggtcagcctgttcgccggcaaggaagagcctgccgcc
gccccggtggtcaccgccgagaagcctgccaccgagcgcactcagcgtaacgaggagcgt
cgcaacggccgccagcagagccgcaaccgcaacggccgccgtgacgaagagcgcaaacct
cgtgaagagcgtgccgagcgcaccccgcgcgaagagcgccagccgcgtgaagagcgcgca
cctcgtgaagaacgtgcacctcgtgaagagcgcgcccctcgccagccacgcgaagaccgc
cgcggcaaccgcgaagagcgcgtccgcgaactgcgcgagcctctggatgcagcaccggcc
gctcgcgaagagcgccagccacgtgaagagcgtgcacctcgcgaagaacgtgctccacgt
gaagaacgcgcacctcgcgaagaacgtgctccacgtgaagagcgcgcgcctcgcgaagaa
cgtgctccacgtgaagagcgtgcgcctcgtgaagaacgcgctccacgtgaagagcgtgca
cctcgtgaagaacgcgcaccgcgtgaagaacgtcagccacgccctccacgcgaagagcgc
cagccacgtgaagctgagcaggctgcagagctcgccgatgagcaactgccgaacgaggag
ctgcaacaggacgagcaggaaggttccgatgacgagcgtccgcgccgccgctctcgcggc
cagcgtcgccgcagcaaccgtcgtgagcgccagcgcaacgccaatggcgagctgatcgaa
ggcagcgacgaagaaggcagcgacgagcaaccgcaacagcaccaggccaccgagctgggt
gccgaactggctgccggcctggctgtcaccgcggctgtcgccagcagcaacataagtgct
ggcgccgaagcgcaagccaaccagcaggctgaacgcgccagcgccgaagccgccaccacc
gacaacagcgaagtcgctcagccggccgagcaggtcgaagccgtcgccaaggccgaggaa
atcgccattgcaccggtggtcgagcagccgctcagcgagccggtcgctgcgatcgaagcc
ggtgccgagcctgtggttgaagttgcgcctgagccggtagtcgaacaagcccctgcggtc
gagccggtagtggttgccgaggcgcctgtagaggcacctgtcgaagcgccggccatcgaa
gcaggtgaagtagagaaagcccaggtcgccgctgaacaagcgccggctgccgagctgcct
gcggctgtcgttgaaacccagccagaagtggctgccgagcctgcagcaaccgtagttgca
gcagcgccagtggtcgccgagcctgccccggtagaagcaccggcagcggtcgaagccgcc
accgtcatgctgcctaacggtcgcgcccctaacgacccacgtgaagtgcgtcgtcgcaag
cgtgaggccgaagcggctgccaaggctgcgcaggaagcggccgctgctggcgcgccaacg
gtggagaccgctgatgagcaaaagcctcatcacggttga

All links

Pathway (2)   
   KEGG PATHWAY (1)   
   KEGG MODULE (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-PPW (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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