KEGG   Pseudomonas putida W619: PputW619_4756
Entry
PputW619_4756     CDS       T00675                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ppw  Pseudomonas putida W619
Pathway
ppw03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ppw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PputW619_4756
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppw03021]
    PputW619_4756
   03400 DNA repair and recombination proteins [BR:ppw03400]
    PputW619_4756
Enzymes [BR:ppw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PputW619_4756
Transcription machinery [BR:ppw03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PputW619_4756
DNA repair and recombination proteins [BR:ppw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PputW619_4756
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 7TMR-HDED
Other DBs
NCBI-ProteinID: ACA75232
UniProt: B1JDX1
Position
complement(5239354..5243427)
AA seq 1357 aa
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK
LSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHVNQLEKAGVNQLDVPMEYVLGR
TTAKAIVHPATGEIIAECNTELTTELLIKIAKAQVVRIETLYTNDIDCGPFISDTLKIDT
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
KVARGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKIDRMIEEQRKAAELRGFLTEIYNEIGGRQENLEEFTDEEILALAHNLKKGVPMATP
VFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq 4074 nt   +upstreamnt  +downstreamnt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcgtatcgcgaattcctgcaa
gcgggagcatccaaggatcagttccgcgacgtcggcctgcacgcggccttcaaatcggta
tttccgatcatcagctactccggcaatgctgccctggagtacgtaggctatcgcctgggc
gaacccgccttcgatgtgaaggaatgtgtcctgcgtggcgtgaccttcgcggtcccactg
cgggtcaaggtgcgcctgatcatcttcgacaaggaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttt
gttatcaacggtaccgagcgtgtgatcgtttcccagctgcaccgttcgcctggtgtgttc
ttcgaccacgaccgtggcaagacgcacagctccggcaagctgctgtactccgctcgcatc
attccgtaccgcggctcctggttggacttcgagttcgacccgaaagactgcgtgttcgtc
cgtatcgaccgtcgtcgcaaactgccggcctcggtactgctgcgcgccctgggttacagc
accgaagaggttctgaacaccttctacaccaccaacgtgttccatatttccggcgagaaa
ctcagcctggaactggtgccgcagcgtctgcgtggtgaagttgcggtcatggacatccat
gacgaaacgggcaaggtcatcgttgaacagggccgccgcattaccgcgcgccacgttaat
cagctcgagaaggccggtgtgaaccagctggacgttccgatggaatacgtcctgggtcgc
accactgccaaggccatcgtgcatccggccaccggcgagatcatcgctgagtgcaacacc
gagctgaccaccgagctgctgatcaagatcgccaaggctcaggtcgttcgcatcgagacg
ctgtacaccaacgacatcgactgcggtccgttcatctcggacaccctgaagatcgacacc
accagcaaccaactggaagctctggtcgagatctaccgcatgatgcgtccaggtgagccg
ccgaccaaggatgctgccgagaccctgttcaacaacctgttcttcagcgccgagcgttac
gacctgtcggccgtaggccgcatgaagttcaatcgccgtatcggtcgcaccgagatcgaa
ggttcgggcgtgctgagcaaggaagatatcgtcgaggtcctcaagacccttgtagatatc
cgtaacggcaaaggcattgttgacgacatcgaccacttgggtaaccgtcgcgtacgttgc
gtcggcgagatggccgagaaccagttccgtgttggcctggtgcgcgtcgagcgcgcggtc
aaggaacgcctgtcgatggctgaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggttgcggcggcggtgaaagagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgtgtttccgcactcggcccg
ggcggtttgacccgtgagcgtgcaggcttcgaagtccgtgacgtacacccgacccactac
ggccgcgtgtgcccgatcgagacccctgaaggtccgaacatcggtctgatcaactccctg
gcggcctatgcccgcaccaaccagtacggcttcctggaaagcccgtaccgcgtggtgaag
gaaggcgtggtcagcgacgatatcgtgttcctgtcggcgatcgaagaagcggatcacgtc
atcgcccaggcttcggccgcgatgaacgacaagaagcaactgatcgacgaactggtggcc
gttcgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgta
tcgccgaagcaggttgtttccgttgctgcctcgctgattccgttcctcgagcacgacgac
gccaaccgtgcactcatgggttcgaacatgcagcgtcaggctgtaccaaccctgcgtgct
gacaagccgctggtcggtaccggcatggagcgcaacgttgcccgtgactccggtgtctgc
gtggttgctcgtcgcggtggtgtgatcgactccgtcgatgccagccgtatcgtcgttcgc
gtagccgacgacgaagtcgagaccggcgaagcaggtgtggatatctacaacctgaccaag
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgagcaaaggtgac
aaggttgcgcgtggcgacatcatggccgacggcccgtccaccgacatgggtgaactggct
ctgggtcagaacatgcgcatcgcgttcatggcgtggaacggcttcaacttcgaagactcc
atctgcctctccgagcgtgtggttcaggaagaccgtttcaccacaatccacattcaggaa
ctgacctgtgtggcgcgtgacaccaagcttggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagctgcactgaacaagctggacgaagccggtatcgtctacgtaggtgct
gaagtcggcgctggcgacatcctggtcggcaaggtcacgccaaaaggcgaaacccagctg
actccggaagaaaaactgctgcgcgcgatcttcggtgagaaggccagcgacgttaaggac
acctccctgcgcgtgccgactggcaccaagggtaccgtcatcgacgtacaggtattcacc
cgtgatggcgtagagcgcgacagccgcgcactggccatcgagaagatgcagctggacgag
attcgcaaggacctcaacgaagagttccgcatcgtcgaaggtgcaaccttcgagcgtctg
cgttctgccctgaacggccaagtggtcgacggtggtgcgggcctgaaaaaaggtaccgtg
atcactgacgaagtgctggacggtctggagcacggccagtggttcaaactgcgcatggct
gaagatgcactgaatgagcagctggaaaaggctcagcagtacatcgtcgatcgccgtcgc
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggca
ccgggcgtactgaagatcgtcaaggtttacctggccatccgccgtcgcatccagccgggt
gacaagatggccggtcgtcacggtaacaaaggtgtggtctcggtgatcatgccggtagaa
gacatgccgcacgatgccaacggtactccggtcgacgtcgtactgaacccgctgggcgta
ccttcgcgtatgaacgtcggtcagatccttgaaacccacctgggcctcgcggccaaaggt
ctgggtgagaagatcgaccgcatgatcgaagagcagcgcaaggccgctgagctacgtggc
ttcctcaccgagatctataacgagatcggtggtcgtcaggagaacctggaagagttcacc
gacgaagagatcctcgccctggcgcacaacttgaagaaaggcgtgcctatggctacccca
gtcttcgacggtgccaaggagcgcgagatcaaggccatgctgaagctggctgatctgcca
gagagcggccagatggtgctgttcgacggccgcactggcaacaagttcgagcgtcctgtg
accgttggttacatgtacatgctcaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggccagcgtttcggggagatggaagtgtgggcgctggaagcatacggcgcggcatac
accctgcaagaaatgctcacagtgaagtcggacgacgtgaacggccgtaccaagatgtac
aagaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgttcgctcggtatcgatatcgatctggaaaccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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