KEGG   Pseudomonas putida DOT-T1E: T1E_0623
Entry
T1E_0623          CDS       T02181                                 
Symbol
pcnB
Name
(GenBank) poly(A) polymerase
  KO
K00970  poly(A) polymerase [EC:2.7.7.19]
Organism
ppx  Pseudomonas putida DOT-T1E
Pathway
ppx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    T1E_0623 (pcnB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppx03019]
    T1E_0623 (pcnB)
Enzymes [BR:ppx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     T1E_0623 (pcnB)
Messenger RNA biogenesis [BR:ppx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     T1E_0623 (pcnB)
SSDB
Motif
Pfam: PolyA_pol_arg_C PolyA_pol PolyA_pol_RNAbd BenE
Other DBs
NCBI-ProteinID: AFO46481
UniProt: I7C095
Position
702744..704126
AA seq 460 aa
MLKKLFQSFRPPVPGPHHRRTTPEVINKSQHSLQRHQFSRHAVNIVERLQSAGYQAYLVG
GCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAH
HSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQRRDFTINALYYDPVSERILDYANGVH
DVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDFGIEKHTYLPIRGLAPMLREIPPAR
LFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASAHALDERPTYTHTLISQALNNTDLRV
KQGKPVTPAFLFAALLWPALPARVLHLQNQGVPPIPAMNGAAHDLIAEQCARIAIPKRFT
LPIREIWDMQERLPRRSGKRADMLLDNPRFRAGYDFLLLRESAGEETDDLGQWWTDYQEA
NDSERREMIRELGSRDDSAGPRKRKRSGSKRKRSGDEAFE
NT seq 1383 nt   +upstreamnt  +downstreamnt
atgctgaagaagctgttccagtctttccgcccgcccgtaccgggcccgcaccacaggcgc
accacgcccgaggtgatcaacaagagccagcactcgctgcagcgccaccagttcagccgt
catgcggtgaacatcgtggagcgcctgcaaagcgccggctaccaggcttacctggtcggt
ggctgtgtccgcgacctgatgctgggcatcacgccgaaggacttcgacgtcgccaccagc
gccacccccgaacaggtccgtgccgagttccgcaacgcccgcatcattggtcgtcgcttc
aaattggtccatgtgcatttcggccgtgagatcattgaagtcgccaccttccgcgcccac
cactccgaggacgaccagggcgatgcccaccgttcgtcgcataacgccagtggccgcatt
ctgcgagacaacgtgtacggcaccctggaagaggacgcgcaacgccgcgacttcaccatc
aacgccctgtactacgatccggtcagcgagcgcattctcgattacgccaacggtgtgcac
gacgtgcgcaatcgcctgctgcggctgatcggggacccgacccaccgctaccaggaagac
ccggtgcgcatgctgcgcgcggtgcgctttgccgccaagctcgactttggcatcgaaaag
cacacctacctgccaattcgcggcctggccccgatgctgcgcgaaattccacccgcgcgc
ctgttcgaggaatgcctcaagctgttcctcagcggccaaggtgccatcgccttcgaaatg
ctggttgacctggagttgttcgaaccgctattcccggccagtgcccacgcgctggatgag
cggccgacctacacccacacgctgatcagccaggcactgaacaacaccgacctgcgcgtg
aagcagggcaagccggtgacgccagccttcctgtttgctgctctgctctggccagctctg
ccggcccgtgtgctgcacctgcagaatcagggcgtgccgccgatcccggccatgaacggt
gcagcccacgacctcatcgccgagcagtgcgcgcgcattgccatccccaagcgtttcacc
ctgccgatccgcgagatctgggacatgcaggagcgcctgccgcgccgcagcggcaagcgc
gccgacatgctgctggacaacccgcgtttccgcgccggttacgacttcctgctgctgcgt
gaaagcgccggggaagaaaccgacgacctgggccagtggtggaccgattaccaggaggca
aacgacagcgagcgccgcgagatgatccgcgagcttggtagccgtgacgacagtgccggc
ccgcgcaagcgcaagcgcagcggcagcaaacgcaagcgcagtggcgacgaggcgttcgag
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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