KEGG   Pseudomonas putida DOT-T1E: T1E_0848
Entry
T1E_0848          CDS       T02181                                 
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
ppx  Pseudomonas putida DOT-T1E
Pathway
ppx03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    T1E_0848 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppx03400]
    T1E_0848 (recD)
Enzymes [BR:ppx01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     T1E_0848 (recD)
DNA repair and recombination proteins [BR:ppx03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     T1E_0848 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 AAA_11 UvrD_C_2 RecD_N Helicase_RecD AAA_22 Viral_helicase1 SH3_13 UvrD-helicase AAA_16 SLFN-g3_helicase AAA_28 AAA_17 nSTAND3 T2SSE AAA_5 NTPase_1 PhoH NACHT AAA_18
Other DBs
NCBI-ProteinID: AFO46706
UniProt: I7C0V3
Position
complement(957982..960057)
AA seq 691 aa
MSRSLVDLLPTPLHAEHLLALAPQHNSADLLQLLDRWVERGWLRALDRAFVSFLEERAPG
SDPLLLLAAALASHQLGHGHVCLDLQQTLAEPDFALSLPPEGDALIGPLLLPSQLLANLD
LNAWLERIVASPLVAAGDTPGQQARPLVRSGERLYLRRYWRYERRIDHALRQRLSQAEAP
PSDLPERLAQLFEGGAPAGQLDWQKLACALATRAGFSIITGGPGTGKTTTVVRLLALLQA
PAVEQGRPLRIRLAAPTGKAAARLTESIGQQVERLQVSAEVRGQIPTEVSTVHRLLGSRP
GSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDALPPRARLVLLGDKDQLASVEAGA
VLGDLCRDAEEGFYSPATAAWLQQVSGESLAGSGLKAGDEQRHPLAQQVVMLRFSRRFGE
GSGIGQLARLVNRQDAHAARNLLAAPPADVHSLSLKHEQDRAFDRLLLDGLNRGTDGPQG
YRSYLRTLGRYRPALDTAFDDPAWEQWAGKVLRSFEDFQLLCAVRRGAWGVEGLNERVAR
VLHNAGLIDSQQPWYEGRPVLVTRNDYGLGLMNGDIGIALRLPDEQGQPLLRVAFPRNDG
SGGVRFVLPSRLNEVETVFAMTVHKSQGSEFSHTALVLPDALNPVLTKELVYTGITRAKH
CFSLVEPRQGIFEEAVARKVRRISGLMLEQV
NT seq 2076 nt   +upstreamnt  +downstreamnt
atgagccgaagccttgtcgacctgttgcccaccccgttgcacgccgagcacctgctggcg
ctggcaccgcagcacaacagcgctgacctgctgcaattactcgaccgttgggttgagcgg
ggctggctacgtgccctggaccgcgcattcgtgtcgttcctggaagagcgtgcccccggc
agtgatcccttgctattgctggcagcggcgctggccagtcaccaactggggcacggacat
gtctgcctcgacctgcaacaaaccttggccgagccggatttcgccctgtcgttgccgccg
gaaggtgacgcccttatcggccctttgctactgccatcgcaactgctggccaaccttgac
ttgaatgcctggcttgagcgcatcgtcgccagcccgctggtggccgcaggtgatacgcct
ggccagcaagcgcggccgctggtacgcagtggcgagcgcctttacctgcgccgttactgg
cgttacgaacggcgcatcgaccatgccctgcgccagcgcctgagtcaggccgaagccccc
ccttcagacctgccagagcgcctggcgcaactgttcgagggcggcgcgccagctggccag
ttggactggcagaagctcgcctgtgccttggccacccgtgccggtttcagcatcatcacg
ggtggccccggcaccggcaagacgaccaccgtggtgcgcctgctggcgttgctgcaggca
ccggcagtggagcagggcaggccactgcgcatccgcctggctgcaccgaccggcaaggcc
gctgcgcgcctgaccgaatccattggtcagcaagtcgagcgactgcaagtcagcgccgaa
gtacgcgggcaaatccctactgaagtcagcaccgtgcatcgcctgctcggcagccgccca
ggctcgcggcacttccgccatcatgctggcaacccgttgccgttggatgtgctggtggtc
gacgaagcgtcgatgatcgacctggaaatgatggccaacctgctcgatgccttgccgccg
cgggcgcgtctggtgctgctgggcgacaaggaccagttggcctcggtcgaggccggcgcg
gtactgggtgacctgtgccgggatgctgaggagggcttttactcgccggcgactgcagcg
tggcttcagcaggtcagtggcgagtcgctggccggcagtggcctcaaggccggcgatgag
cagcgccacccgttggctcagcaagtggtgatgctgcggttttcacggcgtttcggtgaa
ggcagcggtattggccagttggccagactggtcaatcgtcaggatgctcacgcggcgcgc
aacctgctggccgcgccgcctgctgacgtgcacagcctgtcgctcaagcacgagcaggat
cgtgctttcgaccgcctgttactggacggtctgaaccgcggtaccgatggaccgcaaggc
taccgcagctacctgcgcacccttgggcgttaccggccagcacttgataccgcctttgac
gaccccgcctgggagcaatgggcgggcaaggtgttgcgcagtttcgaggatttccagttg
ctgtgtgcggtgcgccggggcgcctggggggtcgaaggcctgaatgaacgggtggcgcgg
gtgctgcacaatgccggtctgatcgacagccagcagccttggtacgaaggacgcccggtg
ctggtgacccgcaacgactacggcctgggcctgatgaatggtgacatcggtatagccctg
cgcttgccggatgagcagggccagccgctgctgcgtgtggccttcccgcgcaacgacggc
agtggtggggtgcggttcgttctgccgagccggctcaacgaagtggaaacggtattcgcc
atgaccgtgcacaagtcccagggctcggagttcagccacactgccctggtgctgccggat
gcgctcaacccggtgctgaccaaggaactggtgtacaccggcatcactcgggccaagcac
tgcttcagcctggtcgagccacgccaaggcattttcgaagaagcggtggcgcgcaaagta
cggcgtatttccgggttgatgctcgagcaggtctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (21)   
   Pfam (21)   
All databases (31)   

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