KEGG   Pseudomonas putida DOT-T1E: T1E_4084
Entry
T1E_4084          CDS       T02181                                 
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
ppx  Pseudomonas putida DOT-T1E
Pathway
ppx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    T1E_4084 (recQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppx03019]
    T1E_4084 (recQ)
   03400 DNA repair and recombination proteins [BR:ppx03400]
    T1E_4084 (recQ)
Enzymes [BR:ppx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     T1E_4084 (recQ)
Messenger RNA biogenesis [BR:ppx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     T1E_4084 (recQ)
DNA repair and recombination proteins [BR:ppx03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      T1E_4084 (recQ)
SSDB
Motif
Pfam: RQC DEAD HRDC Helicase_C RecQ_Zn_bind Sigma70_r4_2 HTH_40 GerE HTH_23 ResIII HTH_29 HTH_28 Glyco_hydro_57
Other DBs
NCBI-ProteinID: AFO49913
UniProt: I7BE18
Position
complement(4461577..4463736)
AA seq 719 aa
MELHMLEQAQRVLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLR
PGLTVVVSPLIALMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGEVKMLYLAPE
RLVQPRMLDFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATA
DMRTREEIVQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGLRRGNAGIVYCL
SRKKVDETAAFLCSQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPN
VRFVAHLDLPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRI
EQHKLDAMLALCEETRCRRQSLLAYFDETLEQPCGHCDNCVDNIQTWDATEPARQALSAV
FRTGQRYGVGHLVDVLLGKDTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVD
IDLEGYGGLRLSDSCRPLLRGEVTLQLRRDLKPQTTAKTSSSSGGSPASQLVRAEERDLW
EALRTLRRKLAEEHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFL
EVLNSSGGTDEAPKVVLDLRHELVSLARAGMTPAQIAGQLNCSEKNVYSLLAEALGRQEL
SLDQAIDLPEDLMMEVQDAFLDGEGELPPVSAIAPQFGARVPEGVLYCVRAALAAEFEL
NT seq 2160 nt   +upstreamnt  +downstreamnt
ttggagttgcacatgctcgaacaggctcagcgcgttctcaaggacatcttcggctacgac
agtttccgtgggcgccaggcagcgatcatcgaatgcgtggccaatggcggcgatgccttg
gtactgatgcccaccggtggcggcaaatcgctgtgtttccaggtgccggggctgctgcgc
ccgggcttgacggtggtggtatcgccactgatcgcgctgatggacgaccaggtcgccacc
cttgacgagctgggtgtgtctgcggccgccctgaactctaccctgacggcggagcagcag
cgtgaactggccgggcgcctgcgccgtggtgaagtcaagatgctgtacctggcgccggaa
cgcctggtgcagccgcgcatgctcgacttcctgcgcgatctggacatctcgctgttcgcc
attgacgaggcccactgcgtttcgcaatggggtcacgatttccgccccgagtacctgcag
ctgggtcagctggccgaactgtttccgcatgtgccgcgcattgcgcttaccgctacggcc
gacatgcgaacccgcgaggagatcgttcagcgcctgcacctgcagggcgccgagcgcttc
ctgtcgagtttcgaccggcccaacatcttctaccgcatcgtgcccaaggaggcaccgcgc
aagcagttgatggcctttctcggcttgcgtcgtggcaacgctggcatcgtctactgtctg
tcgcgcaagaaggtcgacgaaaccgccgccttcctctgcagtcaggggttccctgcgctg
ccgtatcacgccggcctggccgccgagacacgtgcggccaaccagcaccgctttctcaac
gaggaagggctgatcatggtcgctaccattgctttcggcatgggtatcgacaagcccaac
gtgcgcttcgttgctcacctcgacctgcccaaatcgcttgaggcctactaccaggaaacc
ggccgggccggccgtgacggcctgccctccgatgcctggatggcctacgggctgcaggac
atggtgatgctcaagcagatgctgcagaactctgaaggcgacgagcgccacaagcgcatc
gagcagcacaagctggacgccatgctggcgctgtgcgaagaaacgcgctgccgccgccag
tcgctgctggcctacttcgacgaaaccctcgaacaaccgtgcgggcactgcgacaactgt
gtcgacaacatccagacctgggacgccaccgagccggcccgccaggcgctgtcggcggtg
ttccgcaccggccagcgctatggtgttggccacctggtcgatgtgctgttgggcaaggac
accgagaaggtgcgcaatttcggccacgagaagctgtcggtattcggcgttggcaaaggc
ttggccgaggtcgagtggcgttcactgttccgtcagctggtggcgcgcggcctggtcgat
atcgacctggaaggctacggcggtctgcgcttgtccgacagctgtcggccgctgctgcgc
ggcgaggtgaccttgcaactgcgccgtgatctcaaaccgcagaccacggccaaaacctcg
tcgtccagcggcggcagcccggccagccagctggtgcgtgccgaagagcgcgatctgtgg
gaagcgctgcgtaccctgcgccgcaagctggccgaagaacacagtgtgccaccctacgtc
atcttccccgactcgacactgctggagatgctgcgcagccagccggtcagcctcagcgac
atggcccaggtcagcggtgtgggggcgcgcaagctggagcgctacggccaggcgttcctc
gaagtgctgaacagcagcggtggcaccgacgaggcaccgaaagtggtgctcgacctgcgc
cacgaactggtcagcctggcccgtgccggcatgaccccggcgcagatcgccgggcagctc
aactgcagcgagaagaatgtgtatagcctgctggccgaggcgctgggccgccaggagctg
agtctggaccaggccatcgacttgccggaagacctgatgatggaggtgcaggacgccttt
cttgatggcgagggtgagctgccaccggtgtcggccattgccccgcagttcggggcgcgg
gtgccggagggcgtactttattgcgtgcgcgcagcgctggcggcggaattcgaattgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (24)   

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