KEGG T02456: H045

Pseudomonas poae: H045_08195

Entry

H045_08195 CDS T02456

Gene name

ligD

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

ppz Pseudomonas poae

Pathway

ppz03410	Base excision repair
ppz03420	Nucleotide excision repair
ppz03430	Mismatch repair
ppz03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:ppz03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:ppz03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:ppz03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:ppz03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C Exo_endo_phos Exo_endo_phos_2 DNA_primase_S

Other DBs

NCBI-GI:

447916637

NCBI-GeneID:

14503437

Position

complement(1824308..1827682)

AA seq 1124 aa
MQNLKIATFNVNGIGARLPNLLQWLDKEQPDIVCLQELKAQDKAFPAAELEAAGYGCLHH
GQAAWNGVAILARDSEPLLIHKGLPGAEDDSQSRYLEAAVHGVVVGCLYLPNGNPQPGPK
FDYKLKWFEHLIEHARTLQASEHPVVLAGDFNVVPTDFDIYSTRSWLKDALLQPQSRECY
QRLLDQGWVDSVRHLYPEERVYTFWDYFRQHWQKNSGLRIDHLLLNPVLAPHLKNAGVDA
WVRGEEHASDHAPTWIELSSRKTRAKKTPKANKALDEYHHKRDFDTTSEPAGGASKGKKR
TEPNALQFCIQKHDASRLHYDFRLELDGTLKSWAVPKGPSLDPKNKRLAVHVEDHPLDYA
TFEGSIPEGHYGAGDVIVWDRGLWKPLSDPAQAYAKGRLKFELQGEKLGGVWNLVKTHMP
GKQEQWFLIKHQDEFARAESDYDVVKAEPHSVLSERTIVPKKTRAAQAKPVDKAPARRAT
PTPTRAKKLENAVASALPQSLKPELATLVDSAPEGEWRYEIKFDGYRILARVEDGKVQLF
TRNGNDWTHKLPRQAEAIASLGLTSAWLDGEVVVANEHGVPDFQALQNAFEQARSGNIVY
YLFDLPFLNGMDLRDVPVEQRRGALAKVLERSDSEVLKYSADFAETPEALLNSACDMHME
GLIGKRVGSAYQSRRSGDWIKLKCKRRQEFVIIGYTEPKGSRSKFGALLLGLHDDDSGEL
RYAGKVGTGFTLATLATIFAQLTPLEVKKPAVVNPPTGFEAKGVHWLKPALLAEVAFAEI
TQDGAVRQAVFHGLRNDKPAESITEERPAPAVKPKTARKTKAMTQTEPDKKGSTTLRLTH
PQRVIDPASGATKRDLANYYISISEWILPQLLNRPVALVRAPDGIGGELFFQKNAEHLAI
PGIEIIGKEETGHPVMLINNIEALVGAVQMNSIELHTWNALSKNLKKPDRFILDLDPDPA
LPWKSMIEATQLTLTVLDELGLKSFLKTSGGKGIHIVVPLTPKADWDAVKSFSHAVVKHI
ANLLPDRFSAVSGPKNRVGKIFIDYLRNGMGATTICAYAARSREGLPVSVPIFKEELKDL
KGANQWTVRNLHERLGELDADPWADLPGTRQTITAQMRKRIGLT

NT seq 3375 nt +upstreamnt +downstreamnt
atgcagaacctcaagatcgccacattcaacgtcaacggcatcggcgcgcggttgcccaac
ctgttgcagtggctggacaaagagcagccggacattgtctgcctgcaggagctcaaggca
caggacaaagccttcccggctgccgagcttgaggcggccggctacggttgcctgcaccat
gggcaagcggcttggaatggcgtggcgattctcgcccgcgactccgaaccattgttgatt
cacaaaggcttgcccggcgcggaagacgattcgcagtcgcgctacctcgaagcggccgtg
cacggggtggtggtcggttgcctgtacctgcccaacggtaacccgcagccggggcccaag
ttcgactacaagctcaagtggttcgaacacctgatcgaacatgcacgcacgctgcaagca
agcgaacacccggtggtgctggcgggagatttcaatgtggtgcccaccgacttcgacatc
tacagcacccgctcatggctcaaggatgcgctgcttcagccgcagagccgcgagtgttat
caacggttgctggaccagggttgggtcgactcggtgcgtcacctgtatcccgaggagcgg
gtctacacgttctgggattatttccggcaacactggcagaagaattccggcctgcgtatc
gaccatctcctgcttaacccggtactcgccccgcatctcaaaaacgccggtgtcgacgcc
tgggtgcgcggcgaggagcacgccagtgatcatgcgcccacctggatcgagctttcatcg
cgcaaaacacgcgcaaagaagacaccaaaggcgaacaaggctctggacgagtaccaccac
aaacgtgatttcgacacgacttccgaacccgcaggcggcgcgtccaagggcaagaaacgt
accgagccgaacgccctgcagttctgcattcaaaagcacgacgccagccgtctgcattac
gactttcgcctggaactcgacggcaccctcaaaagctgggcggtgcccaaggggccctcg
ctggacccgaaaaacaagcgcctggccgtgcatgtcgaagatcatccgctggactacgcg
acctttgaaggcagcatacccgaaggtcattacggcgccggcgacgttatcgtttgggac
cgcggcctctggaaaccgctgtcggatccggcgcaagcttacgccaaaggccgcctcaaa
ttcgagttgcagggcgaaaagctcgggggcgtgtggaacctggtcaagacgcatatgccg
ggcaagcaggagcaatggtttctgatcaagcatcaggacgagttcgcccgcgccgagagc
gattacgacgtggtgaaggccgagccccacagtgtgctgagcgagcgcaccatcgtgccg
aaaaagaccagggcggcgcaggccaaacctgtcgacaaggcccccgccaggcgcgccacg
cccacgcccacgcgcgcgaagaagctggagaatgccgttgcgtccgcgctgccgcaaagc
ctcaagcctgagctggccacgttggtggattctgcgccggagggtgaatggcgctatgaa
atcaagttcgacggctaccgtatcctggctcgggtggaggacggcaaggtgcaattgttt
acgcgaaacggcaacgactggacgcataagctgccgcgccaggccgaggcgattgccagc
cttggcctcacctccgcctggctcgatggcgaagtggtggtagccaacgaacacggcgtg
ccggatttccaggccttgcagaatgcgttcgagcaggcgcgtagtggcaacatcgtttac
tacctgttcgacctgccctttctcaacggcatggacctgcgtgacgtgccggtggagcaa
cgccggggcgccctggccaaggtgctcgagcgcagcgacagcgaagtactcaagtactcg
gcagacttcgccgaaacgcccgaggcactgctcaacagcgcctgcgacatgcacatggaa
ggtctgatcggcaagcgtgtgggcagtgcgtaccagtcacggcgcagcggcgactggatc
aaactcaaatgcaagcggcgtcaggaattcgtcatcatcggctataccgaacccaagggc
tcgcgcagcaagttcggtgcgctgttgctggggttgcatgatgacgacagcggtgagctg
cgctacgcgggcaaggtgggtaccggcttcaccctggcgacactggcgacgatctttgcg
caattgaccccgcttgaagtcaaaaaacctgcggtggtcaacccgccaacggggttcgag
gccaagggcgtgcattggctcaaacccgcactgctggcagaagtcgcattcgccgaaatc
acccaagacggcgccgtcaggcaggcggtgtttcacgggctgcgtaacgataaacccgcc
gaatcgattaccgaggagcgccctgcccctgccgtcaaacccaaaaccgccaggaagacc
aaggcgatgacccagactgaacccgacaaaaagggctcgaccacgctcaggctcacccat
ccccagcgcgtgatcgaccccgccagcggcgcgaccaagcgtgacctggcgaactattac
atcagcatcagcgaatggatcctgccgcagttgctcaatcgacctgtcgccttggtgcgt
gcgccggatggcattggcggcgagctgttttttcagaaaaacgcagaacacctggcgatt
cccggcattgagatcattggcaaggaagagactggccacccagtgatgctgatcaacaac
atcgaggcgctggtgggcgcggtgcagatgaacagcatcgagctgcacacctggaatgcg
ctgtccaaaaacctgaaaaagcccgatcgcttcattctcgacctggacccggacccggcg
ctgccctggaaaagcatgatcgaggctacccagctgaccttgacggtactggacgaactg
gggctcaaatcctttctcaaaaccagcggcggcaagggtattcacatcgtcgtgccgctg
acgccgaaggccgactgggatgcggtcaaaagcttcagccatgccgtggtcaagcacatc
gccaacctgctgccggatcggttttcggcggtttccgggccgaaaaaccgggtggggaaa
attttcatcgactacctgcgcaatggcatgggcgccaccaccatctgcgcctacgcagca
cgcagccgcgaggggctgccggtgtcagtgccgatcttcaaggaggagttgaaagacctc
aagggcgccaaccaatggactgtgcgcaatctgcatgaacgcctgggcgaactggacgcc
gacccgtgggccgatctgcctgggacccggcaaaccatcacggcgcagatgcgtaagcgc
atcggtttgacgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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