KEGG   Pseudomonas poae: H045_08195Help
Entry
H045_08195        CDS       T02456                                 

Gene name
ligD
Definition
ATP-dependent DNA ligase (EC:6.5.1.1)
Orthology
K01971  
DNA ligase (ATP) [EC:6.5.1.1]
Organism
ppz  Pseudomonas poae
Pathway
Base excision repair
Nucleotide excision repair
Mismatch repair
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppz00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    H045_08195 (ligD)
   03420 Nucleotide excision repair
    H045_08195 (ligD)
   03430 Mismatch repair
    H045_08195 (ligD)
   03450 Non-homologous end-joining
    H045_08195 (ligD)
Enzymes [BR:ppz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H045_08195 (ligD)
DNA repair and recombination proteins [BR:ppz03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      H045_08195 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
complement(1824308..1827682)
Genome map
AA seq 1124 aa AA seqDB search
MQNLKIATFNVNGIGARLPNLLQWLDKEQPDIVCLQELKAQDKAFPAAELEAAGYGCLHH
GQAAWNGVAILARDSEPLLIHKGLPGAEDDSQSRYLEAAVHGVVVGCLYLPNGNPQPGPK
FDYKLKWFEHLIEHARTLQASEHPVVLAGDFNVVPTDFDIYSTRSWLKDALLQPQSRECY
QRLLDQGWVDSVRHLYPEERVYTFWDYFRQHWQKNSGLRIDHLLLNPVLAPHLKNAGVDA
WVRGEEHASDHAPTWIELSSRKTRAKKTPKANKALDEYHHKRDFDTTSEPAGGASKGKKR
TEPNALQFCIQKHDASRLHYDFRLELDGTLKSWAVPKGPSLDPKNKRLAVHVEDHPLDYA
TFEGSIPEGHYGAGDVIVWDRGLWKPLSDPAQAYAKGRLKFELQGEKLGGVWNLVKTHMP
GKQEQWFLIKHQDEFARAESDYDVVKAEPHSVLSERTIVPKKTRAAQAKPVDKAPARRAT
PTPTRAKKLENAVASALPQSLKPELATLVDSAPEGEWRYEIKFDGYRILARVEDGKVQLF
TRNGNDWTHKLPRQAEAIASLGLTSAWLDGEVVVANEHGVPDFQALQNAFEQARSGNIVY
YLFDLPFLNGMDLRDVPVEQRRGALAKVLERSDSEVLKYSADFAETPEALLNSACDMHME
GLIGKRVGSAYQSRRSGDWIKLKCKRRQEFVIIGYTEPKGSRSKFGALLLGLHDDDSGEL
RYAGKVGTGFTLATLATIFAQLTPLEVKKPAVVNPPTGFEAKGVHWLKPALLAEVAFAEI
TQDGAVRQAVFHGLRNDKPAESITEERPAPAVKPKTARKTKAMTQTEPDKKGSTTLRLTH
PQRVIDPASGATKRDLANYYISISEWILPQLLNRPVALVRAPDGIGGELFFQKNAEHLAI
PGIEIIGKEETGHPVMLINNIEALVGAVQMNSIELHTWNALSKNLKKPDRFILDLDPDPA
LPWKSMIEATQLTLTVLDELGLKSFLKTSGGKGIHIVVPLTPKADWDAVKSFSHAVVKHI
ANLLPDRFSAVSGPKNRVGKIFIDYLRNGMGATTICAYAARSREGLPVSVPIFKEELKDL
KGANQWTVRNLHERLGELDADPWADLPGTRQTITAQMRKRIGLT
NT seq 3375 nt NT seq  +upstreamnt  +downstreamnt
atgcagaacctcaagatcgccacattcaacgtcaacggcatcggcgcgcggttgcccaac
ctgttgcagtggctggacaaagagcagccggacattgtctgcctgcaggagctcaaggca
caggacaaagccttcccggctgccgagcttgaggcggccggctacggttgcctgcaccat
gggcaagcggcttggaatggcgtggcgattctcgcccgcgactccgaaccattgttgatt
cacaaaggcttgcccggcgcggaagacgattcgcagtcgcgctacctcgaagcggccgtg
cacggggtggtggtcggttgcctgtacctgcccaacggtaacccgcagccggggcccaag
ttcgactacaagctcaagtggttcgaacacctgatcgaacatgcacgcacgctgcaagca
agcgaacacccggtggtgctggcgggagatttcaatgtggtgcccaccgacttcgacatc
tacagcacccgctcatggctcaaggatgcgctgcttcagccgcagagccgcgagtgttat
caacggttgctggaccagggttgggtcgactcggtgcgtcacctgtatcccgaggagcgg
gtctacacgttctgggattatttccggcaacactggcagaagaattccggcctgcgtatc
gaccatctcctgcttaacccggtactcgccccgcatctcaaaaacgccggtgtcgacgcc
tgggtgcgcggcgaggagcacgccagtgatcatgcgcccacctggatcgagctttcatcg
cgcaaaacacgcgcaaagaagacaccaaaggcgaacaaggctctggacgagtaccaccac
aaacgtgatttcgacacgacttccgaacccgcaggcggcgcgtccaagggcaagaaacgt
accgagccgaacgccctgcagttctgcattcaaaagcacgacgccagccgtctgcattac
gactttcgcctggaactcgacggcaccctcaaaagctgggcggtgcccaaggggccctcg
ctggacccgaaaaacaagcgcctggccgtgcatgtcgaagatcatccgctggactacgcg
acctttgaaggcagcatacccgaaggtcattacggcgccggcgacgttatcgtttgggac
cgcggcctctggaaaccgctgtcggatccggcgcaagcttacgccaaaggccgcctcaaa
ttcgagttgcagggcgaaaagctcgggggcgtgtggaacctggtcaagacgcatatgccg
ggcaagcaggagcaatggtttctgatcaagcatcaggacgagttcgcccgcgccgagagc
gattacgacgtggtgaaggccgagccccacagtgtgctgagcgagcgcaccatcgtgccg
aaaaagaccagggcggcgcaggccaaacctgtcgacaaggcccccgccaggcgcgccacg
cccacgcccacgcgcgcgaagaagctggagaatgccgttgcgtccgcgctgccgcaaagc
ctcaagcctgagctggccacgttggtggattctgcgccggagggtgaatggcgctatgaa
atcaagttcgacggctaccgtatcctggctcgggtggaggacggcaaggtgcaattgttt
acgcgaaacggcaacgactggacgcataagctgccgcgccaggccgaggcgattgccagc
cttggcctcacctccgcctggctcgatggcgaagtggtggtagccaacgaacacggcgtg
ccggatttccaggccttgcagaatgcgttcgagcaggcgcgtagtggcaacatcgtttac
tacctgttcgacctgccctttctcaacggcatggacctgcgtgacgtgccggtggagcaa
cgccggggcgccctggccaaggtgctcgagcgcagcgacagcgaagtactcaagtactcg
gcagacttcgccgaaacgcccgaggcactgctcaacagcgcctgcgacatgcacatggaa
ggtctgatcggcaagcgtgtgggcagtgcgtaccagtcacggcgcagcggcgactggatc
aaactcaaatgcaagcggcgtcaggaattcgtcatcatcggctataccgaacccaagggc
tcgcgcagcaagttcggtgcgctgttgctggggttgcatgatgacgacagcggtgagctg
cgctacgcgggcaaggtgggtaccggcttcaccctggcgacactggcgacgatctttgcg
caattgaccccgcttgaagtcaaaaaacctgcggtggtcaacccgccaacggggttcgag
gccaagggcgtgcattggctcaaacccgcactgctggcagaagtcgcattcgccgaaatc
acccaagacggcgccgtcaggcaggcggtgtttcacgggctgcgtaacgataaacccgcc
gaatcgattaccgaggagcgccctgcccctgccgtcaaacccaaaaccgccaggaagacc
aaggcgatgacccagactgaacccgacaaaaagggctcgaccacgctcaggctcacccat
ccccagcgcgtgatcgaccccgccagcggcgcgaccaagcgtgacctggcgaactattac
atcagcatcagcgaatggatcctgccgcagttgctcaatcgacctgtcgccttggtgcgt
gcgccggatggcattggcggcgagctgttttttcagaaaaacgcagaacacctggcgatt
cccggcattgagatcattggcaaggaagagactggccacccagtgatgctgatcaacaac
atcgaggcgctggtgggcgcggtgcagatgaacagcatcgagctgcacacctggaatgcg
ctgtccaaaaacctgaaaaagcccgatcgcttcattctcgacctggacccggacccggcg
ctgccctggaaaagcatgatcgaggctacccagctgaccttgacggtactggacgaactg
gggctcaaatcctttctcaaaaccagcggcggcaagggtattcacatcgtcgtgccgctg
acgccgaaggccgactgggatgcggtcaaaagcttcagccatgccgtggtcaagcacatc
gccaacctgctgccggatcggttttcggcggtttccgggccgaaaaaccgggtggggaaa
attttcatcgactacctgcgcaatggcatgggcgccaccaccatctgcgcctacgcagca
cgcagccgcgaggggctgccggtgtcagtgccgatcttcaaggaggagttgaaagacctc
aagggcgccaaccaatggactgtgcgcaatctgcatgaacgcctgggcgaactggacgcc
gacccgtgggccgatctgcctgggacccggcaaaccatcacggcgcagatgcgtaagcgc
atcggtttgacgtga

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