KEGG   Pieris rapae (cabbage white): 111003479
Entry
111003479         CDS       T05162                                 
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
  KO
K15865  threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
Organism
prap  Pieris rapae (cabbage white)
Brite
KEGG Orthology (KO) [BR:prap00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:prap03016]
    111003479
Enzymes [BR:prap01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.5  tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
     111003479
Transfer RNA biogenesis [BR:prap03016]
 Eukaryotic type
  tRNA modification factors
   Methylthiotransferase
    111003479
SSDB
Motif
Pfam: Radical_SAM UPF0004 TRAM TRAM_2 TraT
Other DBs
NCBI-GeneID: 111003479
NCBI-ProteinID: XP_022129691
Position
13:complement(535397..540005)
AA seq 537 aa
MPAAFSEIIDDIEDLISSQDITPKERYASRKNVSVRSKRRENKTAEPAEKIILESVVPGT
QTIYVKTWGCAHNNSDSEYMAGLLATHGYNLTEDKWQAQLWLLNSCTVKSPSEDHFKNEI
ELGQNRGIHVVVAGCVPQGAPRANYLTGLSVVGVQQIDRIVEIVEETLKGHTVRLFGTKK
TSDGRKAGGASLLLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGELGSYPPEEIVERA
RQSFKEGVVEIWLTSEDTGTYGRDIGTSLPELLWQLVEVIPEGCRLRLGMTNPPYILEHL
EEVARIMHHPRVYKFLHVPVQSGSDQVLADMRREYTRADFQRVVDFLREKVPGMTIATDI
ICGFPTETEKDFEDTMSLCRRYKFPSLFINQFFPRAGTPAANMRKVPGQEVKKRTKALSE
FFRSYEPYGHKIGETQQVLVTDVSHDKNYFVAHNEFYEQVLVPKEQRYMGKMLNVRIVSA
TKFSMMGEPIDKPTMPGLVKPMKKGQVSGLRERPNKIPIPLLVIFAAVLLRLLWIFL
NT seq 1614 nt   +upstreamnt  +downstreamnt
atgccagcagcattttccgaaattattgacgatatcgaagatttaatatcatctcaagat
ataacacctaaagaaagatatgcaagtagaaaaaatgttagtgtacgatcgaaacgtcgt
gaaaataaaacggcagagcctgctgaaaaaattattttggagagtgtagtaccaggaaca
caaactatatatgtaaagacatgggggtgtgctcacaacaattctgattcagagtacatg
gcaggtttattagcaactcatggctacaatctcacagaagataaatggcaggcgcaactt
tggttactgaactcttgtactgttaagagtccatcagaggaccatttcaaaaatgagata
gaactaggtcaaaatcgtggtatccatgttgtggttgctgggtgtgtgcctcagggagct
ccacgagccaactacctcaccggcctcagtgttgtgggtgtacagcaaattgatagaata
gttgagattgtggaggaaacattaaaaggtcacacggtccgtctatttggcactaagaag
actagtgatggccgtaaagcaggtggtgcatcactattattgcctaaagtgcggaagaac
cctctcattgaaataatatctataaacaccggatgtctgaaccagtgcacatattgtaag
accaaacatgcaagaggagaactgggcagttacccaccagaagaaattgtggaaagggca
agacagtcatttaaggagggagtggttgagatatggttgacaagtgaagatactggcaca
tatggccgtgacattggcacttctctgcccgagttactctggcagttagttgaagtgatt
cctgagggctgtcgtctgaggctaggaatgacgaacccaccttatatacttgaacatttg
gaagaggtcgctcgaatcatgcatcatccacgagtttacaagttcctccatgtgccagta
cagtcaggcagcgaccaagtgttggcggatatgagacgggagtacacccgagcagacttc
caaagagtagtggatttcttaagagaaaaggttcccggaatgacaatagcgacggatata
atttgcggatttccaacggaaacggagaaagacttcgaagacacgatgtccctttgtcgt
cggtacaagttcccgtcgctcttcatcaaccagttctttccacgagctggaacgcccgct
gccaatatgcgaaaggtcccaggccaagaagtcaagaagcgtacgaaagctctttcagaa
ttcttccgatcatacgagccgtacggccacaaaattggagagacccaacaggtgttagtc
accgacgtgtcccacgataaaaattatttcgtggcccacaacgagttctatgaacaggtg
ctggtacccaaagagcagagatatatgggcaaaatgctaaatgtcagaattgtcagcgcc
accaaattctccatgatgggagaaccgattgataagcccacgatgcctggtctcgtgaag
ccgatgaagaagggtcaggtctcaggtcttcgggagaggcctaacaagataccgataccg
cttctggtgatatttgccgcggttttgttacgattgttgtggatattcttatag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (68)   
   KEGG ORTHOLOGY (1)   
   RefGene (64)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (88)   

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