KEGG   Pseudomonas resinovorans: PCA10_33450
Entry
PCA10_33450       CDS       T02708                                 
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
pre  Pseudomonas resinovorans
Pathway
pre03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PCA10_33450 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pre03019]
    PCA10_33450 (deaD)
   03009 Ribosome biogenesis [BR:pre03009]
    PCA10_33450 (deaD)
Messenger RNA biogenesis [BR:pre03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PCA10_33450 (deaD)
Ribosome biogenesis [BR:pre03009]
 Prokaryotic type
  rRNA helicases
   PCA10_33450 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII HEM4 UTP25 TrkA_N
Other DBs
NCBI-ProteinID: BAN49077
UniProt: S6AG16
Position
complement(3691041..3692729)
AA seq 562 aa
MTQEIGEFAALGLHPNVLAAISAVGYEEPSPIQAQSIPVILAGHDMIGQAQTGTGKTAAF
ALPILSRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGLSVVAVYGGAPMGPQLK
ALRQGAQVIVATPGRLCDHLRRDDKLLATVQQLVLDEADEMLKLGFMDDLEVIFEALPES
RQSVLFSATLPPSIRSIAERHLRNPQHVKIAAKTQTVARIEQAHLMVHADQKTGAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPNAQQVLDARIKKLTSAIAPLVVEAEANYGSLLDRLIADIGCSPRAL
AAALLQKATNGQALNLADVEREQPLVPGFQAREPRERRERDGGERGGERGEYRERRAPMP
LAEGRVRCRTALGTRDGIAAKNLLGAILNEGGIAREAIGRIQIRETFSLIELPEEGLDRL
LGKLKDTRVAGKQLKLRRYRED
NT seq 1689 nt   +upstreamnt  +downstreamnt
atgacccaggaaatcggcgaattcgccgcgctcggacttcatcccaatgttctggccgcc
atctcggcggtcggctatgaagagccgtcccccatccaggcccaatcgattccggtgatc
ctcgccggtcacgacatgattggccaggcccagaccggtaccggcaagaccgcagccttc
gcgctgccgatcctgtcccgcatcgatccggccaaacgtgagccgcaggcgctgatcctg
gcaccgacccgcgagctcgcactgcaagttgccaccgccttcgaaacctacgccaagcag
atgcctggcctgagtgtggtcgccgtttacggtggcgcacccatggggccgcagctcaag
gccctgcgccagggcgcccaggtgatcgtggccactccgggccgtctctgcgaccacctg
cgtcgtgatgacaagctgctcgccaccgtgcagcagctggtgctggacgaagcggacgag
atgctcaagctcggcttcatggacgacctcgaagtgatcttcgaagccctgccggaaagc
cgccagagcgtgctgttctccgccacgctgccgccgtcgatccgttcgatcgccgagcgt
cacctgcgcaacccgcagcacgtcaagatcgccgccaagacccagaccgtggcgcgcatc
gagcaggcccacctgatggtccatgccgaccagaagaccggtgctgtgctgcgtctgctg
gaagtcgaggaattcgacgcgctgatcgccttcgtgcgtaccaagcaggcgaccctcgac
ctggccagcgccctggaagccaaaggctacaaggccgccgcgctgaacggcgatatcgcc
cagaaccagcgtgagcgcgtgatcgagtccctcaaggatggtcgtctggacatcgtggtc
gccaccgacgtggctgcccgtggtatcgatgtgccgcgcatcacccacgtgttcaacgtg
gatatgccctacgacccggaatcctacgtacaccgtatcggccgtaccggccgtgccggt
cgcgatggccgtgcgctgctgctggtgacgccgcgtgagcgccgcatgctgcaggtgatc
gagcgtgtgaccggtcagaaggttgccgaagtgcgcctgcccaacgcccagcaagtgctg
gacgcgcgcatcaagaagctgaccagcgccatcgctccgctggtggtcgaggccgaagcc
aactacggctcgctgctggatcgcctgattgccgatatcggttgcagcccgcgcgccctg
gccgcggccctgctgcagaaggctaccaatggtcaggccctgaacctggccgatgtcgag
cgcgagcagccgctggtgccgggcttccaggcccgcgagccgcgcgagcgtcgtgagcgt
gatggtggcgagcgtggtggtgagcgtggtgagtaccgcgagcgccgtgcaccgatgccg
ctggccgaaggccgcgtgcgttgccgcaccgctttgggtactcgcgacggcatcgccgcg
aagaacctgctgggcgcgatcctcaacgagggtggcattgctcgcgaagccatcggtcgc
atccagatccgcgaaaccttcagcctgatcgagctgccggaagaaggcctcgaccgcctg
ctgggcaagctgaaggacactcgcgtggctggtaagcagctgaagctgcgtcgctaccgc
gaagactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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