KEGG   Poecilia reticulata (guppy): 103469867
Entry
103469867         CDS       T05149                                 
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
pret  Poecilia reticulata (guppy)
Pathway
pret03030  DNA replication
pret03410  Base excision repair
pret03420  Nucleotide excision repair
pret03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pret00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103469867 (rfc5)
   03410 Base excision repair
    103469867 (rfc5)
   03420 Nucleotide excision repair
    103469867 (rfc5)
   03430 Mismatch repair
    103469867 (rfc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pret03032]
    103469867 (rfc5)
   03036 Chromosome and associated proteins [BR:pret03036]
    103469867 (rfc5)
   03400 DNA repair and recombination proteins [BR:pret03400]
    103469867 (rfc5)
DNA replication proteins [BR:pret03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    103469867 (rfc5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    103469867 (rfc5)
Chromosome and associated proteins [BR:pret03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    103469867 (rfc5)
DNA repair and recombination proteins [BR:pret03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     103469867 (rfc5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    103469867 (rfc5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_11 AAA_22 RuvB_N AAA_assoc_2 AAA_24 AAA_14 AAA_16 DEAD DUF815 ResIII DNA_pol3_delta AAA_7 PhoH AAA_5 TIP49 AAA_19 AAA_30 ATPase_2 AAA_2 nSTAND3 AAA_25 Thioredoxin_6 Mg_chelatase AAA_3
Other DBs
NCBI-GeneID: 103469867
NCBI-ProteinID: XP_008416101
UniProt: A0A3P9NBP3
Position
LG9:complement(11145626..11151373)
AA seq 335 aa
MASTSKGQLQTRNLPWVEKYRPQTLDDLISHTDILSTIRRFISEDKLPHLLFYGPPGTGK
TSTILACARQLYKDKEFTSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMKPRL
EHVIEKENIDITPDGMNAIVTLSKGDMRRSLNILQSTSMAYEKVTEHTVYTCTGHPLRSD
IANILDWCLNKDFTSAYKQVLELKTLKGLALHDILSEVHLLVHRVDFPPAIRMGLLIKLA
DIEYRLAAGTNEKIQLSSMVAAFQAVRNLVVSEAC
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggcgtccacaagcaaagggcagttacagaccagaaacctaccatgggttgaaaaatac
agacctcagacactggatgatttaatttcacacacagacattctgagcaccatccggagg
ttcatcagcgaggacaagcttccccacctgttgttctacggccctcctggaacaggaaag
acctccaccatcctcgcctgcgcaaggcagctctacaaggacaaagagtttacctccatg
gtgttggagctaaatgcatcagacgacagaggaattgacgtagtccgaggtcctattctg
agtttcgccagcaccaggactattttcaaaaagggcttcaagttggtgatactggatgag
gccgatgccatgacccaggatgcccagaatgcattgcgacgagtcattgagaagtacaca
gaaaacactcgattctgcctgatctgcaactacctgtccaagatcatcccagccctgcag
tctcgctgcaccaggttccgcttcggcccgctgtctccggaccagatgaagcctcgactg
gagcacgttattgagaaggaaaacattgacatcactccagatggaatgaacgccatagtc
actctgtcgaaaggcgacatgagaagatcactcaacatcctgcagagcaccagcatggcg
tacgagaaggtcacagagcacacggtctacacctgcaccggccatcctctccgctctgac
atagccaacatcctcgactggtgcctcaacaaagacttcacttcagcttacaaacaggtt
cttgagctgaagactttgaagggtttggctctgcatgatattctgtctgaggtgcatctg
ctcgtccacagagtggactttcctccggccatacggatgggcctgcttatcaagttagcc
gacatagaataccggctggcggcaggaaccaatgaaaagatccagctgagctccatggtt
gcagccttccaggccgtcagaaacctggtggtcagtgaagcctgttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (28)   
   Pfam (28)   
All databases (44)   

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