KEGG   Poecilia reticulata (guppy): 103472761
Entry
103472761         CDS       T05149                                 
Name
(RefSeq) LOW QUALITY PROTEIN: exosome complex component RRP42-like
  KO
K12589  exosome complex component RRP42
Organism
pret  Poecilia reticulata (guppy)
Pathway
pret03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pret00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103472761
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pret03019]
    103472761
Messenger RNA biogenesis [BR:pret03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     103472761
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     103472761
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 103472761
NCBI-ProteinID: XP_017162850
Position
LG11:complement(19784394..19794865)
AA seq 305 aa
MSSISSLSYDSYQQKCITTEQKKKKPLNRILFSPPCCFFPLSIISSANATPEFEGRGGEE
LGTELSNTLYKVFNNQHSLDLKSLCISPGEHCWVLYVDVLLLQCDGNLYDAISVAIKAAL
FNTKXVCSDDLRVDGRGCEDYRHMEVETDVVSNTDGSAKVTLGHTAVLVGIKAEIGKPRP
MVANEGYLEFFVDWWLSDDPYDCMRLAVENVPCIVTLCKIGHRHVVDATLQEKACSVASL
IISVTHKGIITCSRKVGRGSLDPESICEMIETGKRAGKALHPPLMKLLQQEESLGKKRQK
VGFLG
NT seq 918 nt   +upstreamnt  +downstreamnt
atgtcctccatctcctccctgagctacgatagctatcagcaaaaatgcatcactacagaa
caaaaaaaaaaaaaacctctcaataggatattgttcagtccaccatgttgtttttttcct
ctttcaatcatcagctcagccaatgcaaccccagagtttgagggcagaggaggtgaagag
ctggggacggagctgagtaacaccctctacaaagtcttcaacaaccagcacagcttggat
ctgaagagcctctgcataagtcctggcgagcactgctgggtgctttatgtggacgtgttg
cttcttcagtgtgatgggaatttgtacgacgccatctcagtagcgatcaaagctgctctc
ttcaacacaaagtgagtttgttcagatgatttacgggtggatggaagaggctgcgaggac
tacagacacatggaagtagaaacagatgtggtgtccaacactgacggatccgctaaagtc
actctgggtcacactgcagttctggttgggatcaaggctgagatcggaaaaccgaggccg
atggttgcaaacgagggatayctggagttcttcgttgactggtggctctctgacgacccg
tacgactgcatgagactcgctgtggaaaacgttccctgcatagtgactttatgcaagatc
ggccacagacacgtggtggacgccaccctgcaggagaaggcctgctctgtggcgagcctc
atcatctccgtcacacacaaaggaataatcacctgcagcaggaaggtggggagaggcagc
ctggacccagagagcatctgtgagatgatagagacaggaaaacgagcaggaaaagctctc
caccctcctctcatgaagctgctgcagcaggaggagagtctgggcaagaagaggcagaaa
gtcggattccttggctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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