KEGG   Prosthecochloris sp. CIB 2401: Ptc2401_01689
Entry
Ptc2401_01689     CDS       T04424                                 
Symbol
rnr
Name
(GenBank) Ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
proc  Prosthecochloris sp. CIB 2401
Pathway
proc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:proc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Ptc2401_01689 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:proc03019]
    Ptc2401_01689 (rnr)
   03016 Transfer RNA biogenesis [BR:proc03016]
    Ptc2401_01689 (rnr)
Enzymes [BR:proc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Ptc2401_01689 (rnr)
Messenger RNA biogenesis [BR:proc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Ptc2401_01689 (rnr)
Transfer RNA biogenesis [BR:proc03016]
 Prokaryotic type
  tRNA degradation factors
   Ptc2401_01689 (rnr)
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 Rrp44_S1 UreE_N
Other DBs
NCBI-ProteinID: ANT65425
UniProt: A0A1B1Q3I8
Position
complement(1711583..1713802)
AA seq 739 aa
MTYLSDNEGKRFRSVELAKNLGYTESRNLPGFWYVLHKLQEEGVLDKDSKRCYGLAGQEL
PTYEDVIVQTKQFPCPDKEHYQVDKSYTGRITTHPNGYGFVCVEGFDDDIFINAESLGPA
IHGDEVEVLVTKVPQTYKTQQSPHQRCEGLVTNVLSRSLEVLVGTLQRKNRKYVLLPDSR
NILPEVSVRIKDAAGASDGHKVTLSDLEFTKSGIRGVVREVLGEAGSSEVEVSAIARGYG
IDETFDEKLLEEVTSIGDALTEEDMEGRLDIRDKAVFTIDPVDAKDFDDALSVEVLPKKC
YRIGVHIADVSHYVREGTLLDKEARKRATSVYLVDRVIPMLPSKLSEQICSLNPKVDRLA
FSVFFKVGPEGEVMQHEFRKTVIHSKRRFVYEDVDKILEKGKGSFYKELSVLDTISRKLR
DKRLSEGGLEFETEEVRFKLGSKGEPVEVVKKERLGSHRLIEEFMLLANRKVAEYITTKF
ALKDGTQYPSIYREHGSPKEEKIGILSNFVRKIGYNLELNGTSKDGTPKVTSAALRKLLK
DVHGSNVEFLVNELVLRSMAKALYTGNSDGHFGLGFEFYTHFTSPIRRYPDLVVHRLLFE
YEALRKRRKKLTASRRQEIGMVIDEVCRISNEREKSAVDAERDSIKLKQVEYMSAHVGKT
YSGVISGATEYGIYVRVEEFAIEGLVHMRNLTDDYYEFDPNSYSLVGKRRKRKLQIGQRL
KIKIHKVDMQRRTIDLVLG
NT seq 2220 nt   +upstreamnt  +downstreamnt
atgacctatctctcggataacgagggaaaacggttcaggtctgtagagcttgccaaaaac
cttgggtataccgagtcacggaatcttcccggattctggtatgtgctgcataaactccag
gaagaaggggttctcgacaaggattccaagcgttgctatggccttgcgggccaggagttg
ccaacgtatgaagatgtcattgtccagaccaagcagtttccatgtcccgacaaggaacac
taccaggtcgacaagagttatacgggtcgtattacaacccatcccaacggttacggcttt
gtctgtgtcgagggatttgatgacgatattttcatcaacgcagaatctcttgggccagcc
attcatggcgacgaggttgaagtactggtcaccaaggttcctcagacctacaaaacccag
cagagtcctcaccagcgttgtgaaggtcttgttaccaacgttctgtcacgttctctcgag
gtgctggtagggacactgcagcgcaaaaacagaaaatatgtcctcctgcccgattcccgc
aatattcttccggaagtcagtgttcgcatcaaggacgcggccggggcatccgatgggcat
aaggtaacactcagcgatctggaatttacgaaatccggtatccgcggtgtagtcagggag
gtgcttggtgaagcaggttcgtctgaagtagaggtgagtgctattgcccgtgggtacggt
atcgacgagacattcgatgaaaagcttcttgaggaggttacctcgataggtgatgccctg
actgaagaggacatggagggacgactcgatattcgcgacaaggccgtctttactatagat
ccggtagatgcaaaggatttcgacgacgcgctgtcggtcgaggtgcttcctaaaaagtgc
tatcgtattggcgtgcatattgccgatgtgtcgcactatgttcgcgaagggacccttctc
gacaaggaagcccgcaaaagggctacttcggtctaccttgtcgaccgcgttatcccgatg
ctcccctcgaagctttccgaacagatctgcagcctcaaccccaaggttgaccggcttgcg
ttctctgtctttttcaaggttgggccagaaggcgaagtgatgcagcacgagttccgcaag
accgtgattcactccaagcgtcggtttgtctacgaggatgtggacaagattctcgaaaaa
ggtaagggatcgttttataaagagctttccgtacttgatactataagtcgtaagcttcgt
gacaagcgtctctcggaaggcggcctcgagttcgagactgaagaggtacgcttcaaactg
ggcagcaagggcgaacctgtcgaggtggtcaagaaggagcgtcttggcagtcacaggctg
atcgaggagttcatgctgcttgccaacaggaaggtggcggaatacattaccacaaagttt
gccctgaaagacggcactcagtatccttcaatctacagggagcatggctccccgaaagag
gaaaaaatcggtatcctttcgaacttcgtacgaaagatcgggtataaccttgaacttaac
ggtacatcgaaagacggtactcctaaagtgacctcggccgcattgcgtaagttgctcaag
gatgtacatggaagcaacgtggaattcctcgtcaacgagttggtactgcgttccatggct
aaggctctctataccggtaacagcgatgggcacttcggactcggcttcgagttctataca
cacttcacctcgcctatcaggcgttacccggaccttgtggtgcaccgccttctcttcgaa
tacgaagcgctgcgcaaaagacgcaagaagcttaccgccagtcgtcgtcaggaaataggg
atggtgatcgacgaggtttgccgcatatctaacgaacgcgaaaaaagtgctgtggatgcg
gagcgtgattctatcaagctcaagcaggtcgagtacatgtcggcccatgtcggcaagact
tactccggtgttatttcaggagctaccgagtatggcatctacgtccgcgtagaggagttt
gccatagaagggcttgtgcatatgcgcaacctcacagacgattattacgaattcgatccc
aacagctactcactggtcggcaagcggcgtaagcgcaagctgcagataggtcagcggctg
aagatcaagattcacaaggtcgatatgcaacgacgcaccattgacctggtgcttggataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system