KEGG   Prosthecochloris sp. GSB1: CHL67_01490
Entry
CHL67_01490       CDS       T04996                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pros  Prosthecochloris sp. GSB1
Pathway
pros03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pros00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CHL67_01490 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pros03021]
    CHL67_01490 (rpoC)
   03400 DNA repair and recombination proteins [BR:pros03400]
    CHL67_01490 (rpoC)
Enzymes [BR:pros01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CHL67_01490 (rpoC)
Transcription machinery [BR:pros03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CHL67_01490 (rpoC)
DNA repair and recombination proteins [BR:pros03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CHL67_01490 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: ASQ89766
UniProt: A0A222SGM8
Position
298207..302706
AA seq 1499 aa
MIFSQGASPFKGDFSKIKFSIASPESILAHSRGEVLKPETINYRTFKPERDGLMCEKIFG
PTKDWECYCGKYKRVRYKGIICDRCGVEVTMKSVRRERMGHISLAVPVVHTWFFRSVPSK
IGALLDLSTKELERIIYYEVYVVINPGEPGEKQGIKKLDRLTEEQYLQIITEYEDNQDLD
DDDPAKFVAMMGGEAIHTLLKGLDLDTQAQELRKVLRESGSEQKRADALKRLKVVEAFRK
SYEPVKKTRKKSTGLFPEDEMPEPYVYEGNKPEYMVMEVIPVIPPELRPLVPLEGGRFAT
SDLNDLYRRVIIRNNRLKKLIDIRAPEVILRNEKRMLQEAVDALFDNSRKANAVKTGESN
RPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHECGLPKSMAIELFQPFV
IRRLVERGIAKSVKSAKKLIDRKDPVVWDVLEKVIDGRPVLLNRAPTLHRLGIQAFQPVL
IEGKAIQIHPLVCTAFNADFDGDQMAVHVPLSQEAQLEATLLMLSSHNLILPQSGKPVTV
PSQDMVLGMYYLTKSRAGDKGEGKIFYSTEEVLIAHNEGRIDLHAMIFVRYDGSVDQKFD
PLRMLDMISDDQAEKKSWLKKEIEENRMLVTTVGRVIFNQYVPGKIGFINRVIDKKGAKD
LISRLCNEVGNVQAAEFLDNIKEVGYHYAMKGGLSIGLSDAIIPEAKVQLIKKATKESNK
IIKEYNRGTLTENERYNQVVDVWQKVTNLVAEESYQKLRKDRVGFNPLFMMLDSGARGSR
EQVRQLTGMRGLIARPQKSMSGQPGEIIENPIISNLKEGLTVLEYFVSTHGARKGLSDTS
LKTADAGYLTRRLHDVAQDVIVTEEDCGTTRGLHVERDIEEETGGQIKFSEKIRGRVASR
DIVDSLTDEIIAPAGSIITDELADIIQQNVGVLEADIRSVLTCEAKQGICSKCYGTNLAT
HRLVEIGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAQGGIAETETKSSCEGQVEFEGVRT
VEKESINEDGMPETRSLVIQKNGKINIVDPDTGKVLKRYEVPHGAHLAAAKGSLVKKDDV
LFSSEPNSTQIIAELEGTVKFSDIEKGVTYKEEVDPQTGYVQHVIINWRSKLRASETREP
KILLVGENGDILKTYPVPIKSNLFVEDGQKVSIGDILAKVPRNLDRVGGDITAGLPKVTE
LFEARIPSDPAIVSEIDGYVAFGSQRRSSKEIKVKNDFGEEKTYYVQVGKHVLANESDEV
KAGEPLTDGAVSPQDILRIQGPNAVQQYLVNEIQKVYQLNAGVEINDKHLEVIVRQMLQK
VRIEESGDTELLPGDLIDRTVFIEANTDIAEKVRVIEKGDAPARIQEGQLYKMRDITKLN
RELRRNSKQLIVVEPALQATSHPVLLGITSAALQTESVISAASFQETTKVLTDAAVAGKI
DNLLGLKENVIVGKLIPAGTGLKKYRRLELVRPEAVGEEGFAADESGIDEEVRVETLEE
NT seq 4500 nt   +upstreamnt  +downstreamnt
atgattttttcacagggagcttcaccgttcaagggtgatttttcgaagataaagttcagc
attgcatctcccgagagcattctcgcccattcaaggggcgaggtgctcaagcctgaaacc
atcaattaccgtaccttcaaaccggaacgggatggcctgatgtgcgaaaagattttcggt
ccgaccaaggactgggagtgctattgcggaaagtacaagcgcgtccgttacaaaggcatc
atctgcgaccgttgcggcgtggaggttaccatgaagagtgtccggcgcgagcgcatgggg
catatttccctggcggtgccggtcgtgcacacctggtttttccgctcggttccgagcaag
atcggcgcattgctggatctctcgaccaaggagctcgaacgcatcatctattatgaagtc
tatgtggtgatcaatcccggcgagccgggcgaaaaacaggggatcaagaaactcgacagg
ctgacggaagagcagtatctgcagatcatcaccgagtacgaggacaatcaggatctcgac
gacgacgatcccgcgaagttcgtcgccatgatgggcggcgaggctatccatacccttctc
aaggggctcgatctcgatacgcaggcgcaggaactgcgcaaggtgttgcgcgaaagcggc
tcggaacagaaaagggccgacgccttgaaacgcctcaaggtcgtcgaagcgttcagaaaa
agctacgagccggtcaagaaaacccggaagaagtccacgggcctttttccggaggacgaa
atgcccgaaccctacgtctacgagggcaacaagcccgaatacatggtcatggaggtcata
ccggtcattccgcctgagcttcgtcctctcgtgccgctcgaaggcggccgtttcgcgact
tcggatctcaacgatctgtacaggcgggtcattatccgcaacaacaggctgaagaagctg
atcgatatccgtgcgcccgaggttattctgcgcaacgaaaagagaatgttgcaggaagcc
gtcgatgcgcttttcgacaactcccggaaagcgaacgccgtcaagaccggtgaatcgaac
cggccgctcaagtccctttcggatgcgctcaagggtaaacaggggcgtttccgccagaat
cttctcggaaagagggtcgactattccggccggtcggtcatcgtcgtcggacccgagctc
aagctgcacgaatgcggtcttccgaaaagcatggccatagaactgttccaaccgttcgtt
atccgccgtctcgtggagcgaggtatagcgaaatccgtcaagtccgcaaagaaactcatc
gacaggaaggatcccgtcgtctgggatgtgctcgagaaggtcatcgacgggcggcccgta
ttgctcaaccgcgctccgacgctgcatcgcctcggaatccaggcgttccagccggtgttg
atcgagggcaaggcgatccagattcacccgctcgtctgtacggcgttcaacgccgacttc
gacggcgaccagatggccgttcacgtgccgctctcacaggaggcgcagctcgaggcgaca
ctgctcatgctttcgtcgcacaacctcatacttccgcagtcgggaaaaccggttaccgtt
ccttcccaggacatggtgcttggtatgtactacctgaccaaatcaagagccggcgacaaa
ggtgaaggaaagatcttctacagcacggaagaggtgctgatcgcccacaacgagggccgt
atcgacctgcatgcgatgattttcgtcaggtacgacggcagtgtcgaccagaagttcgat
cctcttagaatgctcgatatgatttccgacgaccaggcagagaaaaaatcgtggctgaaa
aaagagatcgaggaaaaccgaatgcttgtcacgaccgtaggccgggtgatcttcaaccag
tacgtgcccggaaaaatcggtttcatcaacagggttatcgacaagaaaggtgcgaaggat
cttatttcgaggctctgcaacgaggtcggtaacgtccaggcggcggaatttctcgataac
atcaaggaggtcggttaccattacgccatgaaaggcgggttgtcgatcgggctttccgac
gcgatcattccggaggccaaggtgcagctcatcaagaaagccaccaaggaaagcaacaag
atcatcaaggaatacaaccggggcaccctgacggaaaacgaacgctacaaccaggtcgtc
gacgtctggcagaaggtgacgaacctcgtcgccgaggaatcgtaccagaagcttcgcaag
gacagggtcggattcaatccacttttcatgatgctcgattccggcgcccgaggttcgaga
gagcaggtgcgtcagcttaccggcatgaggggactgatagctcgtccccagaaatccatg
tcaggtcagccgggcgagattatcgagaacccgatcatctcgaacctgaaggaagggctc
acggttctcgagtacttcgtctcgactcacggcgcccgaaaaggtctctccgacacgtcg
ctcaaaaccgccgacgcggggtatctgaccaggaggcttcacgatgtcgcgcaggatgtc
atcgtgacggaagaagactgcggaacgacgagggggttgcatgtcgagcgcgacatcgag
gaagagaccggaggacagatcaagttcagcgagaaaattcgcggcagggtcgcctcccgg
gatatcgtcgacagcctgaccgacgagatcatcgcgccggccggcagcatcattaccgac
gaacttgccgacatcatccagcagaacgtcggggtgctcgaggccgacatccgctcggtg
cttacctgcgaagccaagcaggggatctgttcaaaatgctacggaacgaacctcgcgacc
cacaggctggtggaaattggagaggctgtcggcgtcatcgccgcgcagtcgatcggtgag
ccgggtacgcagttgacgcttcgtaccttccatcagggcggcaccgcccagggcggcatc
gccgagaccgaaaccaaatcatcgtgcgaaggccaggtcgaattcgagggtgtcaggact
gtcgagaaagaaagcatcaacgaagacggcatgcctgaaacaagaagcctcgtcatccag
aagaacggcaagatcaacatcgtcgatccggatacaggaaaagtgctgaagcgttacgag
gttcctcacggcgctcatctggctgcggcgaagggaagccttgtcaagaaggacgatgtg
ctgttcagcagcgagcccaacagcacccagatcatcgccgaactcgaagggacggttaaa
ttctccgacattgaaaagggcgtgacgtacaaggaagaggtcgatccccagaccggctat
gtacagcacgtcatcatcaactggcgctcgaaactcagggcttccgaaacgagggagcca
aagattcttctcgtcggcgagaatggcgatatcctgaaaacctatcccgtgccgatcaaa
tccaaccttttcgtcgaggacggccagaaagtttccatcggcgatatcctcgccaaggtg
ccgagaaacctcgatcgtgtgggcggcgatatcacagccggtctgccgaaagtgaccgaa
ctgttcgaggccaggattccatcggatccggcaatcgtctccgaaatcgacggctacgtc
gcgttcggttcccagcggaggagcagcaaggaaatcaaggtcaagaacgatttcggcgaa
gaaaagacctactacgtccaggtcggcaagcatgttctcgcaaatgaaagcgacgaggtc
aaggccggcgagccgctgaccgacggagcggtttcaccccaggacattcttcgtattcag
ggtcccaatgccgttcagcagtacctggtgaacgagatccagaaggtataccagctcaat
gcaggtgtcgagatcaacgacaagcatctcgaggtcattgtccgccagatgctgcagaag
gtgaggatcgaggagtccggagacacggaactgctgccgggcgacctgatcgaccgcacg
gtcttcatcgaggccaacaccgatatcgccgaaaaagtcagggttatcgagaaaggcgac
gctccggcaagaatacaggaagggcagctttacaagatgcgagacattacgaaactcaat
cgcgagcttcgccgcaacagcaaacaactgatcgtcgtcgagcccgcgcttcaggctacc
tcgcatcccgtgctgcttggtattaccagcgcggccttgcagaccgaaagcgtcatctcg
gcagcttcgttccaggagacgaccaaggttcttaccgatgccgcagtcgccggaaagatc
gacaacctgctcggtttgaaggaaaacgtcatcgtcggcaagctgatcccggcaggcacc
ggactgaaaaagtatcgcaggctggaacttgtcaggccagaagcggtcggtgaagaaggt
ttcgcggctgacgaaagcgggatagacgaggaagttcgggtcgagacgctcgaagagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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