KEGG   Pseudoalteromonas rubra: AT705_06450
Entry
AT705_06450       CDS       T04179                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
prr  Pseudoalteromonas rubra
Pathway
prr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:prr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT705_06450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:prr03019]
    AT705_06450
   03009 Ribosome biogenesis [BR:prr03009]
    AT705_06450
Messenger RNA biogenesis [BR:prr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AT705_06450
Ribosome biogenesis [BR:prr03009]
 Prokaryotic type
  rRNA helicases
   AT705_06450
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_22
Other DBs
NCBI-ProteinID: ALU42624
UniProt: A0A0U3I4J2
Position
1:1433107..1434942
AA seq 611 aa
MSEPVTFESLDLSPAILKAVEELGYQSPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNVDASVKQPQILVLTPTRELALQVAEAFNQYAKYTKGVEVLALYGGQSYGVQLSA
LRRGAQIIVATPGRLIDHINRKTIDLSDLKALVLDEADEMLRMGFIDDVESIMEKTPVEK
QTCLFSATMPKQIQSICSKYLDNAEQVKITPRNSTVDTIEQVYWRATTHKNKAIVRFLEA
EDYDASIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGLLDIVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRKGKAILFVKGNERYLLRNIMR
HTRSDIEQVELPNAKVVEQKRIEALQGKLSLALDHKDIEFFSEVAQGMAEKLELTQTELS
AALLCLAQQQSPLKVQEIQVQRERRERDGNRDGNRERRGERGERKGNARRNTGPMDTYRI
EVGREHGVQVKNIVGAIANEADISSKFIGEIRLFDEHSTVQLPQDMPADTLSHFQSVYIC
QRPMKMTKSTHPADQGNGGERRGGERRSGGRDERRFEGRNEGRGDRKRSFKDPRGDKRDN
RRKERGEISFS
NT seq 1836 nt   +upstreamnt  +downstreamnt
atgtcagaaccagtcacgtttgaatctttagatctttctcctgcaattttgaaggcagtc
gaagagctgggatatcaatcaccttctgagatccaggctcaatgtataccgttattgcta
gaaagaaaggacgtgctgggactagcgcagacgggtacgggcaaaacggcggcgttcgcg
ttgccgctattaaacaatgttgacgcatccgttaagcaaccacagatattagtattgact
ccaacacgcgaactggctttacaggtcgcggaagccttcaaccaatacgctaaatacacc
aaaggtgttgaagtattggctctgtatggcggacaaagctatggcgtgcagctaagcgca
ctgcgtcgtggcgcacaaatcattgtggcaacacctggtcgtttgattgaccatattaac
cgtaagaccattgatttgtcggatctgaaagccttagtgctggacgaagccgatgagatg
ctacgcatgggctttatcgatgatgttgaaagcatcatggaaaaaacaccagtagagaaa
caaacctgtttgttctcagcaaccatgccaaagcagatccaatctatttgttctaagtat
ttagataacgcagagcaagtaaaaatcacaccacgtaactcaacggtagacaccattgag
caagtttactggcgtgcaacgacacataaaaacaaagccatcgtacgtttcttagaagcg
gaagattacgatgcgtctatcgtgtttgttcgtactcgtaacgatactgttcagctggct
gagctactcgagcgcgaaggtttctctgcagcaccacttaatggtgacatgaaccagcaa
gcccgtgagcgcacggtagagcgtctgaaaagcggtctgttagacatcgttatcgcaact
gacgttgcggcacgtggtctggacgtagatcgtctgagcttggttatcaactatgatatc
ccacaagacagcgaagcctatgttcaccgcatcggtcgtacaggtcgtgctggtcgtaaa
ggtaaagctatcctgtttgttaaaggtaatgagcgttacctgctacgtaacatcatgcgt
catactcgctctgatatcgagcaggttgaactgcctaacgcgaaagttgttgagcaaaag
cgcattgaagcactacaaggcaagctaagcctggcgctggatcacaaagacattgagttc
ttcagtgaagtggcacaaggcatggctgaaaagctagagctgactcaaacagaactgtcc
gctgcactactgtgcctggcacagcagcagtctccgctgaaagtgcaagagatccaggta
caacgcgagcgtcgcgagcgcgatggtaatcgtgacggtaaccgcgaacgtcgcggtgag
cgtggcgaacgtaaaggcaatgcacgtcgcaacaccggtcctatggatacctatcgtatc
gaagtaggtcgtgagcacggcgtacaggtcaagaacatcgttggtgcgattgcgaacgaa
gcggatatctcaagcaagtttatcggtgaaatccgtttgtttgatgagcacagcacagtg
cagctgcctcaggatatgcctgcagatactctgtcacacttccagagcgtttacatttgt
cagcgcccaatgaagatgaccaagagcacacacccagccgatcaaggcaatggtggtgag
cgtcgcggtggcgaacgtcgttcgggcggtcgtgatgagcgtcgctttgaaggccgcaac
gaaggccgtggcgatcgcaagcgcagcttcaaagacccgcgtggtgacaagcgtgataac
agacgcaaagagcgtggtgagattagcttttcctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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