KEGG P.syringae_B728a: Psyr

Pseudomonas syringae pv. syringae B728a: Psyr_4270

Entry

Psyr_4270 CDS P.syringae_B728a

Gene name glyA

Definition serine hydroxymethyltransferase (EC:2.1.2.1)

Orthology K00600 glycine hydroxymethyltransferase [EC:2.1.2.1]

Pathway psb00260 Glycine, serine and threonine metabolism
psb00460 Cyanoamino acid metabolism
psb00670 One carbon pool by folate
psb00680 Methane metabolism
psb01100 Metabolic pathways

Class Metabolism; Energy Metabolism; Methane metabolism [PATH:psb00680]
Metabolism; Amino Acid Metabolism; Glycine, serine and threonine
metabolism [PATH:psb00260]
Metabolism; Metabolism of Other Amino Acids; Cyanoamino acid
metabolism [PATH:psb00460]
Metabolism; Metabolism of Cofactors and Vitamins; One carbon pool by
folate [PATH:psb00670]

SSDB

Motif Pfam: SHMT Aminotran_1_2 Beta_elim_lyase Aminotran_5 DegT_DnrJ_EryC1
PROSITE: SHMT

Other DBs NCBI-GI: 66047497
NCBI-GeneID: 3369810
JGI: Psyr_4270
UniProt: Q4ZNH2

Position 5094122..5095375

AA seq 417 aa
MFSRDLTIAKYDADLFAAMEQEALRQEEHIELIASENYTSPAVMEAQGSALTNKYAEGYP
GKRYYGGCEYVDIIEQLAIDRAKELFGADYANVQPHAGSQANSAVYLALLQGGDTILGMS
LAHGGHLTHGASVSSSGKLYNAVQYGIDANGMIDYDEVERLAVEHKPKMIVAGFSAYSQI
LDFPRFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLIL
ARANAEIEKKLNSAVFPGSQGGPLEHVIAAKAVCFKEALQPEFKTYQQQVVKNAKAMAGV
FIERGFDVVSGGTENHLFLLSLIKQDISGKDADAALGRAFITVNKNSVPNDPRSPFVTSG
LRFGTPAVTTRGFKEAECKELAGWICDILADLNNEAVIDAVREKVKAICAKLPVYGA

NT seq 1254 nt +upstreamnt +downstreamnt
atgttcagccgtgatttgactatcgccaagtacgacgccgatctgtttgccgccatggag
caagaagctctgcgtcaggaagaacacatcgagctgattgcctcggaaaactacaccagt
ccggccgtcatggaagctcagggctcggccctgaccaacaagtacgccgaaggctatcca
ggcaagcgctactacggtggttgcgagtacgtcgacattatcgagcaactggccatcgac
cgcgccaaggaactgttcggcgctgattacgccaacgtccagccacacgccggttcgcaa
gccaactcggcggtctacctggccctgctgcaaggcggcgacaccattctgggcatgagc
ctggctcacggtggtcacctgacccacggcgccagcgtttcgtcctcgggcaagctgtac
aacgccgttcagtacggcatcgatgccaacggcatgatcgactacgacgaagtcgagcgc
ctggccgtcgagcacaagccaaaaatgatcgtcgccggtttctctgcctactcgcagatc
ctcgacttcccgcgcttccgcgccatcgctgacaaggtcggtgcctacctgttcgtcgac
atggcgcacgtcgccggtctggtcgccgcaggcgtctacccgaacccggtgccattcgcc
gacgtcgtgaccaccaccacgcacaagaccctgcgcggtccgcgtggcggcctgatcctg
gcgcgcgccaacgccgagatcgagaagaagctgaactcggcggtgttccctggctcccag
ggcggcccgctggagcacgtcatcgcggccaaggccgtgtgcttcaaggaagcgctgcag
cctgagttcaagacctaccagcagcaagtggtgaagaacgccaaggccatggccggcgtg
ttcatcgagcgtggcttcgacgtcgtttccggcggtaccgagaaccacctgttcctgctg
tcgctgatcaaacaggacatctccggtaaagacgctgacgccgctctgggtcgcgccttc
atcaccgtcaacaagaactccgtaccgaacgacccacgctccccgttcgtcacctccggc
ctgcgcttcggcaccccggcagtgaccactcgcggcttcaaggaagctgagtgcaaggaa
ctggccggctggatctgcgacatcctggctgacctgaacaacgaagccgtgatcgacgcg
gttcgtgagaaggtcaaggccatctgcgccaagctgccggtttacggcgcttga

All links

Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JGI-PSB (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (5)   
   PROSITE (1)   
All databases (22)

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