KEGG   Pseudomonas syringae pv. syringae B728a: Psyr_4555
Entry
Psyr_4555         CDS       T00246                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
psb  Pseudomonas syringae pv. syringae B728a
Pathway
psb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:psb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Psyr_4555
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psb03021]
    Psyr_4555
   03400 DNA repair and recombination proteins [BR:psb03400]
    Psyr_4555
Enzymes [BR:psb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Psyr_4555
Transcription machinery [BR:psb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Psyr_4555
DNA repair and recombination proteins [BR:psb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Psyr_4555
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 7TMR-HDED
Other DBs
NCBI-ProteinID: AAY39585
UniProt: Q4ZMN7
Position
complement(5412429..5416502)
AA seq 1357 aa
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRGEN
LSLELVPQRLRGEIAVLDILDDKGKVIVEQGRRITARHINQLEKAGIKELEVPLDYVLGR
TTAKVIVHPATGEIIAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMGQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGRVAEGGAGLKKGQEITNEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKVAELRKFLNEIYNEIGGRQESLEDLTDNEILDLAKNLRNGVPMATP
VFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERAVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYCAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq 4074 nt   +upstreamnt  +downstreamnt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtaatggatgtgccgtatctcttggccatccagctggattcgtatcgcgaattcctgcag
gcgggagcgaccaaagatcagttccgcgacgtcggtctgcatgcagccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtatgtaggttatcgcttgggc
gaaccggcatttgatgtcaaggaatgcgtgctgcgcggtgtgacttacgcagtacctctg
cgagtcaaggtccgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatacccctgatgactgagaacggtaccttt
gtaatcaacggcaccgagcgcgttatcgtgtctcagctgcaccgttcgcctggcgtattc
ttcgaccacgaccgtggcaagacgcacagctccggtaagctgctgtactccgctcgtatc
attccttaccgcggttcgtggctggacttcgagttcgatccgaaagactgcgtattcgtc
cgtatcgaccgtcgtcgcaagctgcctgcgtccgtacttctgcgcgctctgggttacacc
accgagcaagtgctcgatgcgttctacaccaccaacgtattccatgtgcgcggtgaaaac
ctgagcctggaactggtgcctcagcgcctgcgtggtgaaattgccgttctggacatcctg
gacgacaagggcaaggtcattgtcgagcagggtcgtcgtatcactgcccgtcacatcaac
cagctggaaaaggccgggatcaaagagctggaagtgcctctggactacgtcctgggtcgc
actacagccaaggtcatcgtgcatccggcaaccggtgagatcattgccgagtgcaacacc
gagctgaacactgaaatcctggccaagatcgccaaggctcaggttgttcgtatcgaaacc
ttgtacaccaacgacatcgattgcggtccgttcgtctccgacacactgaagatcgactcc
accagcaaccaactggaagcgctggtcgagatctatcgcatgatgcgtcctggcgagccg
ccaaccaaggatgccgctgaaacactgttcaacaacctgttcttcagccctgagcgttat
gacctgtccgctgtaggtcgtatgaagttcaaccgtcgtatcggtcgtaccgaaatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtagcggtcctcaagaccctcgttgatatc
cgtaacggcaaaggcatcgtcgatgacatcgaccacctcggtaaccgtcgcgttcgttgc
gtaggcgagatggccgagaaccagttccgtgttggtctggtccgtgtcgagcgcgctgtc
aaagagcgtctgtccatggcagaaagcgaaggcctgatgcctcaggacctgatcaacgcc
aaacctgttgcggcggcggtcaaggagttcttcggttccagccagctttcccagttcatg
ggccagaacaacccgctgtccgagatcacgcacaagcgtcgtgtttccgcactcggccct
ggcggtctgacgcgtgagcgcgccggctttgaagttcgagacgttcacccgactcactac
ggccgtgtgtgcccgatcgagacgcctgaaggtccgaacatcggtctgatcaactccctg
gcggcctatgcccgcaccaaccagtacggcttcctcgagagcccgtaccgtgtggtcaag
gaaggtctggtcaccgaagagatcgtgttcctttcagcgatcgaagaagcggatcacgtc
attgcccaggcttcggccgcaatgaacgacaagcaagagctgatcgacgaactggttgct
gtgcgtcacttgaacgaattcaccgtcaaggcgccagccgatgtcaccctgatggacgtt
tcgcccaagcaggttgtctcggtagctgcatcgctgattccgttcctcgagcacgatgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgttcctactctgcgcgcc
gacaagccgctggtaggtactggcatggagcgcaacgttgctcgcgactccggcgtttgc
gtcgtggctcgtcgcggtggtgtgatcgactcggttgacgccagccgtatcgttgttcgc
gttgccgatgatgaagttgaaacaggtgaggcgggtgtagacatctacaacctgaccaaa
tacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtcagcaagggtgac
cgtgttcagcgtagcgacatcatggccgacggcccgtccaccgatatgggtgaactggcg
ctgggtcagaacatgcgcatcgcgttcatggcctggaacggtttcaacttcgaagactcc
atctgtctttctgagcgtgttgttcaggaggaccgtttcaccacgatccacattcaggaa
ctgacctgtgtggcgcgtgataccaagcttgggccagaggaaatcacagctgacatccct
aacgtgggtgaagcggctctgaacaagctggacgaagcgggtatcgtttatgtaggtgcc
gaagtcggcgccggcgacatcctggtcggtaaggtcactccgaaaggcgagacccagctg
actccggaagaaaaactgttgcgcgcgatcttcggtgagaaggccagcgacgttaaagac
acctccctgcgcgtaccaaccggtaccaaaggtactgtcattgacgttcaggtcttcacc
cgtgatggtgtcgagcgtgatgcgcgtgccctgtccatcgagaagtcgcaactcgacgag
atccgcaaggatctgaacgaagagttccgtattgtcgaaggcgctactttcgaacgtctg
cgctctgcgctggtgggtcgtgtagctgaaggcggcgctggcctcaagaagggccaggaa
atcaccaacgaagtgctcgatggtcttgagcatggtcagtggttcaagctgcgcatggct
gaagatgctctcaacgagcagctcgaaaaagctcaggcttacatcgttgatcgtcgccgt
cttctggatgacaagttcgaagacaagaaacgcaaactgcagcagggcgatgacctggct
ccaggcgttctgaaaatcgtcaaggtctacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctctgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcacgccggttgatatcgtcctcaacccgctgggcgta
ccttcgcgtatgaacgttggtcagattctcgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccgcatgctcgaagagcagcgtaaagttgctgagctgcgcaag
ttcctcaacgagatctataacgaaatcggcggtcgtcaggaatctctggaagacctcacc
gacaacgagattctggacctcgcgaagaacctgcgtaacggcgtaccgatggctaccccg
gttttcgacggtgccaaggaaagcgaaatcaaggcaatgctcaagctggcagatatgccg
gaaagcggccagatgcagctgttcgacggtcgtaccggcaacaagtttgaacgtgctgta
acggttggctacatgtacatgctgaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcgtacagcctggttacccagcagccgctgggtggtaaggcacagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcatactgcgcggcgtac
actctgcaggaaatgctcacagtgaagtcggacgatgtgaacggtcgtaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtctttcaacgtg
ttgatcaaagaaatccgttcgctcggtatcgatatcgatctggaaaccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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