KEGG T01643: DSC

Pseudoxanthomonas spadix: DSC_15030

Entry

DSC_15030 CDS T01643

Definition

DNA ligase D

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

psd Pseudoxanthomonas spadix

Pathway

psd03410	Base excision repair
psd03420	Nucleotide excision repair
psd03430	Mismatch repair
psd03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:psd03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:psd03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:psd03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:psd03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

357418671

NCBI-GeneID:

11373707

UniProt:

G7UVI9

Position

complement(3070536..3073028)

AA seq 830 aa
MSLHEYERKRRFDQTPEPRGGQAGRDARRPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRPGEKRLAVEVEDHPLDYASFEGDIPQGHYGAGHVQVFDHGHWTCEGDPLEAIAA
GKLDFILFGEKLGGAWKLVRTNLRGKQRQWLLIKRDDEFAADQEADDLVAAPAASAAATA
RSKPARSRATTSEQAAPGTPARAPAMPRKRGNSEAAWKRRALELDGARDTPYPPGYPPQL
CKLRALAPAGDDWLHEIKWDGYRLLADLVQGEVRLRSRNGLDWNAMFPEVVAAVRALPVR
DARLDGELVVVDAQGRSDFSALQRTIDGTAKAQLRYLVFDLPGVAGVDISRAPLRQRKAL
LKTLLGDGPGLIAFSDHVLGHGPEVFATSARAGLEGIVSKRVDSAYAGGRSEAWVKVKHE
QTDEFVVVGYTAPKGTRSGFGSLLMARVDKGVLVYAGRVGTGYDDAMLKSLLARLQPLHS
DRAPVELPAHVPFKPRSVHWVKPQLVAEVAFRGWGKEGLLRQAAFKRLREDKDMAALQAD
AGDGAGTVTITHPERVVYPGDGITKGQVADYYRRVAPLLLPELAGRPLSLLRCPNGAGGE
CFFQKHYAPSLGKAVHAVPLKQKSGTEDYLYVEDIDGVLALVQMNTLELHPWGSTVAAPE
KPDRLVFDLDPGPGVSWPQVKDAARQVRANLRKTGLESFVRLSGGKGLHVVVPIDPGPSW
DTVKEFCEAFANAMAQQQPERYIATMSKAKREQKIFIDWLRNGRGSTSVCSWSLRAREHA
TVAMPLRWEELGKVDSPDQFTLDKALQRAARLKGDPWKDIATLSQALPHA

NT seq 2493 nt +upstreamnt +downstreamnt
gtgtcgctgcacgaatacgagcgcaagcgccgcttcgaccagacccccgagccgcgcggc
ggacaggccggccgtgacgctcgtcgcccgatcttcgtggtgcagttgcaccacgcctcc
tcgcgccattacgacttccgcctggaagccgatggcgtgctcaagagctgggccgtgccc
aagggcccgtccttgcgccctggcgaaaaacgcctggcggtggaagtggaagaccacccg
ctggactacgccagttttgaaggcgacatcccgcagggccactacggcgccggtcacgtg
caggtgttcgaccacggccactggacctgcgaaggcgacccgctggaagccatcgccgcc
ggcaagctggatttcatcctgttcggcgagaagctcggcggtgcctggaagctggtgcgc
accaacctgcgcggcaagcagcgccagtggctgctgatcaagcgtgacgacgaattcgcc
gccgaccaggaagcagacgatctggtcgctgcgccggccgcttcggccgccgccacggcg
cgttcgaagcctgcgcgcagcagggccacgaccagcgaacaggccgcacccgggacgcca
gccagggcgccggccatgccgcgcaagcgtggcaacagcgaggcagcctggaagcgccgc
gcgctggaactggacggggcccgcgacacgccgtatccgcccggctacccgccgcagctg
tgcaagctgcgcgcgctcgcgccggccggcgatgactggctgcacgagatcaagtgggac
ggctatcggctgctggccgacctggtccaaggcgaggtcaggctgcgctcgcgcaacggc
ctggactggaacgccatgttcccggaagtggtcgccgcggtgcgcgcgctgccggtgcgc
gatgcgcgcctggatggtgagctggtggtggtcgatgctcagggccgcagtgatttctcg
gcgctgcagcggaccatcgacggcaccgccaaggcgcagctgcgctacctggtgttcgac
ctgccgggcgtggccggggtggatatcagccgcgcgccgctgcggcaacgcaaggcgctg
ctcaagacgctgctgggcgatgggcccggcctgatcgccttcagcgaccacgtgctgggc
catggcccggaggtctttgccaccagcgccagggccgggctggagggcatcgtcagcaag
cgtgtggattcggcctatgccggcgggcgttcggaggcctgggtcaaggtcaagcacgag
cagaccgatgaattcgtggtggtcggctacaccgcacccaagggcacgcgcagcggcttt
ggatcgctgctgatggcgcgcgtggacaagggggtgctggtgtacgccgggcgggtgggc
accggctacgacgatgccatgctcaagtcgctgctggcgcggctgcaaccgctgcacagc
gaccgcgccccggtggagctgcccgcgcatgtgccgttcaagccgcgcagcgtgcattgg
gtcaagccgcagctggtggccgaagtggccttccgcggctggggcaaggagggcctgctg
cgccaggccgcattcaagcgcttgcgtgaggacaaggacatggctgcactccaggccgat
gccggcgatggcgccggcacggtgaccatcacccatcccgagcgggtggtgtaccccggg
gacgggatcaccaagggccaggtggccgactactaccgccgtgtcgcgccgctgctgctg
ccggagctggccggtcggccgctgtcgctgctgcgctgcccgaacggcgccggtggtgaa
tgcttcttccagaagcactacgcgccgtcgctgggcaaggccgtgcacgcggtgccgctg
aagcaaaaaagtggcaccgaggactacctgtacgtcgaggacatcgacggggtgctggcg
ctggtgcagatgaataccctggagctgcacccgtggggttcgaccgtggctgcgccggaa
aagccggaccggctggtgttcgacctggatccaggcccgggcgtgtcctggccgcaggtc
aaggatgccgcgcggcaggtccgcgccaacctgcgcaagaccgggctggagagctttgtg
cgcctgtccggcggcaagggcctgcacgtggtggtgccgatcgacccgggccccagctgg
gacacggtcaaggagttctgcgaggccttcgccaatgctatggcccagcagcagcccgag
cgctatatcgccacgatgagcaaggccaagcgcgagcagaagatcttcatcgactggctg
cgcaacggccgcggcagcaccagcgtgtgcagctggtcgctgcgtgcacgcgaacacgcc
accgtggccatgccgctgcgctgggaagagctgggcaaggtcgactcacccgaccagttc
accctggacaaggccctgcagcgcgccgcgcgcctcaagggcgacccgtggaaggacatc
gccacgctcagccaggcgctgccgcacgcctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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