KEGG   Pseudomonas sp. TCU-HL1: THL1_318
Entry
THL1_318          CDS       T05373                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pset  Pseudomonas sp. TCU-HL1
Pathway
pset03030  DNA replication
pset03410  Base excision repair
pset03420  Nucleotide excision repair
pset03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pset00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    THL1_318
   03410 Base excision repair
    THL1_318
   03420 Nucleotide excision repair
    THL1_318
   03430 Mismatch repair
    THL1_318
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pset03032]
    THL1_318
   03400 DNA repair and recombination proteins [BR:pset03400]
    THL1_318
Enzymes [BR:pset01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     THL1_318
DNA replication proteins [BR:pset03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     THL1_318
DNA repair and recombination proteins [BR:pset03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     THL1_318
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     THL1_318
   MMR (mismatch excision repair)
    DNA ligase
     THL1_318
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      THL1_318
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB RNA_ligase DUF3701
Other DBs
NCBI-ProteinID: AOE82866
UniProt: A0A1B3E011
Position
complement(344636..346306)
AA seq 556 aa
MKAWISAPLLLPCLALANACPDWPADRANAELDALTRRIADWDFAYHHEGHSAVDDELYD
QARARLARLSSCFPVAALPVRDPLAGSDGKVRHPAAQTGLDKLRDINELRRWMGQRRDLW
VQPKVDGVAVTLVYRESRLVQVISRGDGRHGQDWTPHAGRIAAVPQKLAGIGDGVLQGEL
FWHLPDHVQAERGGQGARGKVAGLLNRRKLTRRDASGIGLFIWDWPDGPVQMEMRLQGLQ
AMGFTDAEALTRPVASADEIAHWRDHWYRSPLPFASDGIVIRQGTRPAARRWKPQPPNWA
IAWKYPFAKALAEVRAVEFKVGRTGRVTPLLQLEPVTLDDRRIQRVGLGSLQRWRQLDVR
PGDQVAIALAGLTIPRLESVVLRAAERLPVEAPDSRQYHALSCFRRSPGCEAQFLARLDW
LGGPGGLALAGVGRGTWASLALDGLLDWLALDAPGLAARPGIGAARATALAQRFDEARNR
PFARWLKALGIPPTGSAKLEGDWSSLSSRTAADWQQMEGLGPARAEQLAAFFQHPEVRVL
AERLQAEGVAGFGAPQ
NT seq 1671 nt   +upstreamnt  +downstreamnt
atgaaagcctggatttccgctccattactcctgccctgcctcgccctggccaacgcctgc
cccgactggccggcagaccgagccaacgccgaactcgacgctctcaccaggcgcatcgcc
gactgggacttcgcctatcaccacgaggggcactcggcggtggacgacgaactctacgac
caggcccgcgcccgccttgcgcggttgagcagctgctttcccgtcgcggcattgccggtt
cgcgatcccctggccgggagcgacggcaaggtccgccatcccgcggcccagaccggtctg
gacaagttgcgcgacataaacgaactgcgccgctggatgggtcagcggcgcgacctctgg
gtacagcccaaggtggacggggtggccgtgacgctggtgtaccgcgaaagccgactggtg
caagtcatcagccgcggggatggccgtcacggacaggactggaccccgcatgcaggacgc
atcgcggcagttccccagaagctggccggcattggcgacggcgtgctgcagggcgaactt
ttctggcacctgccagatcacgttcaggcagagcgtggcggccaaggggcacgcggaaag
gtggccggcctgctcaatcgacgcaagctgaccagacgcgatgccagtggcatcggcctc
ttcatctgggactggccggatgggccggtgcagatggaaatgcgcctgcaaggcctgcag
gccatgggtttcaccgatgccgaggcgctgacccgtcccgtcgcaagcgccgacgaaatc
gcccactggcgagatcactggtaccggtcgccgctaccgtttgccagcgacggtatcgtc
attcgccagggcacccggcctgcggcacgacggtggaagccgcaaccgccgaactgggcc
atcgcctggaagtaccccttcgccaaggcactggcggaagtacgcgccgtggagttcaag
gtgggccgcacgggccgggtcacgcccctgctccagctggagccggtgacgctggatgac
cgccgcatccagcgggtcgggctcggctccctgcaacgctggcggcaactggatgttcgc
ccaggcgaccaggtggccattgccctggccggcctcaccatcccaaggctggaatcagtg
gtactgcgcgccgccgaacgcctgcccgtggaggcgcccgacagtcgccagtaccacgcg
ctgagctgctttcgccgcagccccggctgcgaggcgcagttcctcgcacgcctggactgg
ctgggcggacccggaggcctggcattggccggcgtgggccgcggcacctgggccagcctt
gcgctggacggcctgctcgactggctggcactggacgcacccggactggcggcccggccg
ggaatcggcgctgcccgcgcaacggcactggcgcaacgcttcgacgaagcccgaaatagg
ccctttgcgcgatggctcaaggccctggggattccgccgacaggctcggcaaagctggaa
ggtgactggtcgagcctgagcagccggacggcggcggattggcaacagatggaaggcctg
ggcccggccagggccgaacagcttgcggcgttcttccagcacccggaggtacgggtgctg
gcggagcggcttcaggccgaaggggtggcaggcttcggggcgcctcagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

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