KEGG   Stutzerimonas stutzeri RCH2: Psest_3729
Entry
Psest_3729        CDS       T02391                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
psh  Stutzerimonas stutzeri RCH2
Pathway
psh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Psest_3729
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psh03021]
    Psest_3729
   03019 Messenger RNA biogenesis [BR:psh03019]
    Psest_3729
Transcription machinery [BR:psh03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Psest_3729
Messenger RNA biogenesis [BR:psh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Psest_3729
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 AAA_22 NACHT AAA
Other DBs
NCBI-ProteinID: AGA88206
UniProt: L0GQB2
Position
complement(3900545..3901804)
AA seq 419 aa
MNLTELKQKPITELLEMAEQMGIDNMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRPPKEGERYFALLKVDSIN
YDRPENAKNKILFENLTPLFANERLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNLELQLDRRIAEKRVFPAINI
NRSGTRREELLTSEEELQRIWILRKLLHPMDESAAIEFLLDKLKDTKTNDEFFMSMKRK
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatctgactgaactcaagcaaaagcccatcaccgaactgctggaaatggccgaacag
atgggcatcgacaacatggcccgttcgcgcaagcaggacgtgattttctccctgctgaag
aagcacgctaaaagcggcgaggaaatttccggtgatggcgtgctggagattctccaggac
ggtttcggcttcctgcgctccgcggattcttcctatctggccggcccggacgacatctac
gtctcgcccagccagattcgtcgcttcaatctgcgtaccggtgacaccatcatcggtaag
attcgcccgcccaaggaaggcgagcgttacttcgccctgctcaaggtcgactcgatcaac
tacgatcggccggagaacgcgaagaacaagatcctcttcgaaaacctgaccccgctgttc
gccaacgagcgtctgaagatggaggccggcaacggctccaccgaagacctcactggccgc
gtgatcgacctctgtgcaccgatcggcaagggccagcgtggcctcatcgttgctccgccg
aaagcgggcaagacgatcatgctgcagaacattgccagcaacatcacccgtaacaacccc
gagtgccacctgatcgtgctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggtcgcctccaccttcgacgagccgccgacccgccacgtg
caggtcgccgagatggtgatcgagaaggcaaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctggattccatcacccgcctagcgcgcgcttacaacaccgtgatcccgagc
tccggcaaggtcctgaccggtggtgtcgacgcccatgcgctggagaagcccaagcgtttc
ttcggtgccgcgcgcaatatcgaggaaggcggttcgctgaccattctcgccaccgcgctg
gtcgaaaccggctcgaagatggacgaggtgatctacgaggaattcaagggcaccggcaac
ctggagcttcagctcgatcgccgcatcgccgagaagcgcgtgttcccggccatcaacatc
aatcgctcgggtacccgccgcgaagagttgctgaccagcgaagaagagctgcagcgcatc
tggattctgcgcaagctgctgcacccgatggatgaaagcgccgccatcgaattcctgctc
gacaagctcaaggacaccaagaccaacgacgaattcttcatgtccatgaagcgcaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system