KEGG   Stutzerimonas stutzeri DSM 10701: PSJM300_16960
Entry
PSJM300_16960     CDS       T02182                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
psj  Stutzerimonas stutzeri DSM 10701
Pathway
psj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:psj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PSJM300_16960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psj03021]
    PSJM300_16960
   03400 DNA repair and recombination proteins [BR:psj03400]
    PSJM300_16960
Enzymes [BR:psj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PSJM300_16960
Transcription machinery [BR:psj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PSJM300_16960
DNA repair and recombination proteins [BR:psj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PSJM300_16960
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 ApbA_C DUF3150 PPDFL
Other DBs
NCBI-ProteinID: AFN79449
Position
complement(3675661..3679860)
AA seq 1399 aa
MKDLLNLLKNQGQIEEFDAIKIALASPEMIRSWSFGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHEIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFHGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EASLHARVKVRINETVKGRDDSITKNTRIVDTTVGRALLFQIVPEGMSFDVVNQPMKKKA
ISKLINLCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKAHIIGAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRDGKEAEQDSFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEQGLHMTPHIEGGDVVEPLGERVL
GRVIARDVLKPGTEEVLVPAGTLIDEKWVDFIELNSVDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAVDNVLVKNGGTIRL
HNLKHVERADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDGGAVVAKW
DPHTHPIVTEMKGVVTFVGMEENITIKRQTDELTGLTNIEVMDPKDRPAAGKDIRPAIKM
VDANGKELLLPGTDVPAQYFLPANALVGVADGAEINVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPTDGTDPYEELIPKWRHLNVFE
GEQVNKGEVISDGPSNPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLEENERLGEEDKFVAKYVRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLQYHSERKRKRDADKPVR
VSADEVEAALTEALNSSSN
NT seq 4200 nt   +upstreamnt  +downstreamnt
ttgaaagacctgctgaatctattgaaaaaccagggtcaaatcgaagagttcgatgccatc
aagattgcgctggcatcgcccgagatgattcgttcctggtccttcggtgaagtgaagaaa
ccggagaccatcaactaccgtacgttcaagcccgagcgtgaaggtctgttctgcgccaag
atctttggcccggtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcat
cgcggcgtgatctgcgagaagtgtggcgtcgaagtcgcgctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgctggacatgaccctgcgtgacatcgagcgcgtgctctat
ttcgagagctacgtggtgatcgatccgggcatgaccacgctcgagaaaggccaactgctg
aacgacgagcagtacttcgaggcgctcgaagagttcggtgacgacttcgatgcccgcatg
ggcgccgaggccgtgcgcgagctgctgcacgaaatcgacctggagcacgagatcggtcgc
ctgcgtgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagctttccatggctcgggcaacctgcccgagtggatggtgctgacc
gttctgccggttctgccgccggatctgcgtccgctggttccgctggatggcggtcgtttc
gcgacctcagatctcaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctcaag
cgtctgctggacctggccgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagccgtcgacgccctgctggacaacggccgtcgcggccgtgccatcaccggttcgaac
aagcgcccgctgaagtccctggccgacatgatcaagggcaagcagggccgcttccgtcag
aacctgctcggcaagcgcgtcgactactccggtcgttccgtgatcaccgtgggcccgacc
ctgcgcctgcaccagtgcggcctgccgaagaagatggctctcgagctgttcaagccgttc
atcttcggcaagctagagatgcgcggcatggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgcccgaggtgtgggacgttctcgccgaagtgattcgcgaacatccc
gtgctgctcaaccgtgcgccgaccctgcaccgtctgggtatccaggcgttcgagccggtg
ctcatcgaaggcaaggcgatccagctgcatccgctggtgtgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtccacgttccgctgaccctcgaggcccagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcgagccgattatc
gtgccgtcgcaggacgtggtgctgggtctgtactacatgacccgcgaagcgatcaacgcc
aagggcgaaggccgggtgttcgccgatctgcaggaagtcgaccgcgtgttccgcgccggc
gaggcgtcgctgcatgcgcgcgtgaaagtgcgtatcaacgagaccgtcaaagggcgtgac
gacagcatcaccaagaacacccgcatcgtcgacaccactgtcggccgtgcgctgctgttc
cagatcgttccggaaggcatgtcgttcgacgtggtcaaccagccgatgaagaagaaggcg
atctccaagctgatcaacctgtgctaccgcacggtgggtctgaaggacactgtcatcttc
gctgaccagctgatgtacaccggtttcgcctactcgaccatctccggtgtgtcgatcggc
gtgaacgacttcgtcatcccggatgagaaggcgcacatcatcggtgcggccaccgaggaa
gtgaaggagatcgagagccagtacgcgtccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctctggtccaaggccaacgacgaagtctccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgtgacggtaaagaagccgagcaggattcgttcaac
tcgatgtacatgatggccgactcgggcgcgcggggttctgctgcgcagattcgccagctg
gccggtatgcgtggcctgatggccaagccggatggctccatcatcgagacgccgatcacc
gcgaacttccgtgaaggcctgaacgtactgcagtacttcatttccactcacggtgcgcgt
aagggtctggcggataccgcactgaagaccgcgaactccggttacctgacgcgtcgcctg
gtcgacgtggcccaggatctggtggtgaccgagatcgactgcggtaccgaacagggtctg
cacatgacgccgcacatcgaaggcggcgacgtggtcgagccgctcggcgagcgtgtgctg
ggtcgtgtcattgctcgtgatgtcctcaagccgggcaccgaggaagtgctggtgccggcc
ggtaccctgatcgacgagaagtgggtcgatttcatcgaactcaacagcgtcgatgaagtg
atcgtgcgttctccgatcagctgtgaaacgcgctacggcatctgtgccaagtgctacggt
cgcgatctggcccgtgggcatcaggtcaacatcggcgaggccgtgggtgtcatcgcggcc
cagtcgatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gccagccggacctcggcggtcgacaacgtgctggtgaagaacggcggtaccatccgcctg
cacaacctgaagcacgtcgagcgcgccgatggcgccctggtggcggtatcgcgctccggt
gagctggcggtagcggacgacttcggtcgcgagcgcgagcgttacaagctgccgtacggt
gcggtcatttccgtgaaggaaggcgacaaggtcgatggcggggccgtcgtggccaagtgg
gatccgcacacccacccgatcgtgaccgagatgaagggtgtcgtgaccttcgtcggcatg
gaagagaacatcaccatcaagcgccagaccgacgagctgaccggtctgaccaacatcgaa
gtgatggatccgaaggaccgtccggccgccggcaaggacatccgtccggcgatcaagatg
gtcgatgccaatggcaaggaattgctgctgccgggtaccgacgtgccggcccagtacttc
ctgccggccaacgctctggtcggtgtagccgatggcgccgagatcaatgtgggtgacgtc
atcgcgcgtatcccgcaggaaacctcgaagacccgcgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgccggccgaaagagccgtcgatcctcgcggaaatcagc
ggcactatctccttcggcaaggaaaccaagggcaagcgccgcctggtcatcacgccgacc
gatggtaccgatccttacgaggagttgatcccgaagtggcgtcacctgaacgtgttcgaa
ggcgagcaggtgaacaagggcgaagtcatctccgacggcccgagcaacccgcacgacatc
ctgcgcttgctgggtgtcagcgcgctggccaagtacatcgtcaacgagatccaggacgtg
taccgcctgcagggtgtgaagatcaacgacaagcacatcgagacgattcttcggcagatg
ctgcgcaaggtcgagatcagcgagtcgggcgactccagcttcatcaagggcgaccagatg
gagctgacccaggtgctggaagagaacgagcgcctgggcgaagaggacaagttcgttgcc
aagtacgttcgcgtgctgctgggcatcaccaaggcctcgctgtccaccgagtcgttcatc
tctgcggcctccttccaggagactactcgcgtcctgacggaagcggcggtgaccggcaag
cgcgactatctgcgcggcctgaaggaaaacgtggtggtgggtcgcctgatcccggccggt
accggtctgcaatatcacagcgagcgcaagcgcaagcgtgatgcggacaagccggtacga
gtaagtgctgatgaagtcgaggcggctcttaccgaggcgctgaactccagcagcaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system