KEGG T01374: PSM

Pseudoalteromonas sp. SM9913: PSM_B0584

Entry

PSM_B0584         CDS       T01374

Symbol

rnd

Name

(GenBank) putative RNase D, processing tRNA precursors

K03684

ribonuclease D [EC:3.1.13.5]

Organism

psm Pseudoalteromonas sp. SM9913

Brite

KEGG Orthology (KO) [BR:psm00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:psm03016]
    PSM_B0584 (rnd)
Enzymes [BR:psm01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     PSM_B0584 (rnd)
Transfer RNA biogenesis [BR:psm03016]
Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    PSM_B0584 (rnd)

SSDB

Motif

Pfam:

DNA_pol_A_exo1 RNAseD_HRDC_C HRDC DNA_pol_A_exoN Acetyltransf_6

Other DBs

NCBI-ProteinID:

ADT70619

Position

II:643236..644366

AA seq 376 aa
MHYQLIQTQNELNTFVEQIKNKPILAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLAE
LSLFDFWQILKDPKVLKVLHSPSEDIEVFQKYAGFVPYPLFDTQFALQLLGEGNCMGFAL
MVKTLLNIEIDKSESRTNWLQRPLTQKQLEYAAADTYHLLPCFELIIDSIKAADLFDIVI
NESELVANKRAFQIPDELLYKEIKNAWQLKPHELAVLKELAVWRRNKAIRKNLALNFVLK
EHNMTEIAKRGPSSLNALRQIPGVEPIEVNRSGVEILKCIEQAKAIPAEQHPQVLKRLID
FPTYKKVAKEIKQKITKVAKEHNIPEDVMASKKQINQLISWNWKLTAQQKEKHIKPDLLS
SWRYDFVKDALKEWDN

NT seq 1131 nt +upstreamnt +downstreamnt
gtgcactaccaattgatccaaacccaaaatgagcttaatacgtttgtagaacaaattaaa
aacaaacccattcttgctattgataccgagtttatgcgccgccgtactttgtatccagaa
gttgcacttattcaagtttatgatggtgaacatttagcgcttattgacccgcttgccgag
ctttccttgtttgatttttggcaaatacttaaagatcctaaagtgctaaaagtactccat
tcaccctcagaagatattgaagtttttcaaaagtacgcagggtttgttccttatccttta
ttcgatacccagtttgcacttcagctattaggtgagggaaactgtatgggctttgcctta
atggtgaaaacattattgaatattgagattgataaaagcgaatcgcgcactaattggtta
caacgcccccttacccaaaagcaacttgaatacgctgctgctgatacgtatcacctgctg
ccttgttttgagttaattatagatagcattaaagccgctgatttatttgatattgtgatc
aatgaaagtgaattagttgccaataaacgtgcttttcaaattccggatgaactactttac
aaagaaattaaaaatgcatggcaacttaagccgcatgaactagcggtacttaaagagtta
gcagtatggcgtcgaaataaagctattcgtaaaaatctagcgcttaattttgtgcttaaa
gagcacaatatgaccgaaattgccaaacgaggcccttcaagtttaaatgctctgagacaa
attcctggggtagaacccattgaagtgaatcgttctggggttgaaattttaaagtgtatt
gagcaggccaaagccattccagctgagcaacacccacaagtattaaagcggttaattgat
tttcctacctataaaaaagtagcgaaggagatcaaacaaaaaattactaaagttgctaaa
gagcataacattccagaagacgttatggcctctaaaaagcaaataaatcagctaattagt
tggaactggaagttaactgctcagcaaaaagaaaaacacataaaaccagatttactcagc
tcatggcgatatgattttgttaaagatgcgctaaaagagtgggataattag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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