KEGG   Phytophthora sojae: PHYSODRAFT_359974
Entry
PHYSODRAFT_359974 CDS       T03459                                 
Name
(RefSeq) hypothetical protein
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
psoj  Phytophthora sojae
Pathway
psoj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psoj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHYSODRAFT_359974
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psoj03019]
    PHYSODRAFT_359974
Enzymes [BR:psoj01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     PHYSODRAFT_359974
Messenger RNA biogenesis [BR:psoj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PHYSODRAFT_359974
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     PHYSODRAFT_359974
SSDB
Motif
Pfam: WASH_WAHD Exo_endo_phos zf-C6H2 WH2 HrpB7
Other DBs
NCBI-GeneID: 20650086
NCBI-ProteinID: XP_009523484
JGI: Physo3_359974
UniProt: G4Z398
Position
Unknown
AA seq 1227 aa
MRKSRPMSPSPSRGPRSLSPPRGSPVHGEGKISLRVDQPVEGCKMMTHAFFRSGDGDIDD
KNVDMQFHWYRSSMRRACANPECTRHTSDGAGNVLLLVAKIECVQCCRLGITREHSCFCS
PDCFRLAWHKHKQLHDTQALLETQQREDGDFPWKSQLHNMETFCPLPKESWVKVQEENRS
YTPSAEDVGHVIRVECQATKRVGGGVLTKTVDTGIVLPFPPMPPRRQMLANVNEERLTPR
LRQIGVFRVLTYNILAEIYATRQMYPYCPIWALSWSFRRELLKRELQSYNADIICLQEVQ
GDHYKNFFAPMMEDWGYEGWYLKKSRESMGLEGKVDGCALFYKRNRFILKERYPVDFNDL
ANEFLNQVQTEYDLDYQGPSMAAREMFLSTLNKMRQRLQRDNVAQIAVLEVVPANNEVVA
RKSQSGPLICIANVHIFSNPKFPDVKMWQTNMLAKQLERVTLSRNLPTILCGDFNSEPTS
AVYEFMTRNHVPLDHPDIQYPPPLIANIYASLDLEHSIGFASAYASVFGAEPEYTNYTGH
WTGVVDYVWYTPETLTPFAGLKVHPPEVLEAYSKTALPNCQFLSDHVPLFGPQSGSLTNT
KSNHVALASPSGCCHTPVPSEQKTSLHLTPRARTMQTSQVYAVDRVYGDLQPQFVAKDVL
KALSQLDAVVGDVFNRLAHKVSQEKERVAAVDARIQVCQAKVNALTARRTSNKPTTVFST
SKYPAPRQLPLSRTLFHDKPYADAPPLVPDADDDTHFLPAEPLPPAQRGQHMAEVVELFE
KVNEYQKTQQPEADMEKEGLGRLPEYIPSVGSVLLFNSGENPYQKYTSWDNLLGTDYEEE
EEKRKELAKAPRTIEYGDELPAVHGLNYEFHPSMGIMPDMSAKLPTNLPLENIADYKYAQ
ESNTSIAPSMFQDKALPDLPAVANFAEGPVAQEPSEQNFQVGPVDGAPPPPPPAPTVDFT
KIDDGAPPPPPPPPPAQEDEEDDSAPPPPPPPMANSEDEDAPPPPPPPQEDGPPAPPAPE
EEDNQPPIVSLLDQIRNPNIKLKKVDPNEKKDDPIAKAGDTANKPLTIAEEMQQRMLRRQ
AAISGKQDQMEQKREREKAAAKPVTVLTAKEVTAPTQPPPPPPPSDDGQQHNKLPTLAMS
DDGSDDGRGNISDDDKSNDGDDFLAQIRNIKKKQEEGGPNTQPRQPPPPPKTQEIKNPVA
DFESQMIGLRNREDSLSMSEASDWSDD
NT seq 3684 nt   +upstreamnt  +downstreamnt
atgagaaagagccgccccatgtcgccgtcgccgtctcgagggccgcggtcgctgtcgccg
cccaggggctcccccgtgcacggcgagggcaagatctcgctgcgcgtggaccagcccgtg
gagggctgcaagatgatgacgcacgccttcttccgctccggggacggcgacatcgacgac
aagaacgtggacatgcagttccactggtacaggtcctccatgcggcgcgcgtgcgccaac
ccggagtgcacgcgccacacgagcgacggcgccggcaacgtgctgctgctcgtggccaag
atcgagtgcgtgcagtgctgccgactcggcatcacgcgggagcactcgtgcttctgcagc
ccggactgcttccgcctggcctggcacaagcacaagcagctgcacgacacgcaggccctg
ctcgagacgcagcagcgggaggacggcgactttccctggaagtcgcagctgcacaacatg
gagacgttctgcccgctgcccaaggagtcgtgggtcaaggtgcaggaggaaaaccggtcg
tacacgccttccgctgaggacgtcggccacgtgattcgagtggagtgccaggccaccaag
cgtgtcggcggcggcgtgctgaccaagacagtcgacactgggatcgtgctgccgtttccg
cccatgccaccgcgtcggcagatgctcgcgaacgtgaacgaagagcggttgaccccgcgg
ctgcggcagattggcgtcttccgagtgctcacgtacaacattttggccgagatctacgcg
acgcgacagatgtacccgtactgcccgatctgggctttgagctggtcattccggagggag
ctgctcaagcgcgagctgcagtcgtacaacgccgacattatctgtctccaagaagtacag
ggtgaccactacaagaacttttttgctccgatgatggaggactggggctacgagggctgg
tacttgaagaagtcgcgcgagtcgatggggcttgagggcaaggtggacggctgtgcgctc
ttttacaagcgcaaccgattcatcctcaaggagcggtacccagtcgatttcaacgacctc
gcgaacgagttcctgaaccaggtgcagacggagtacgacctagactaccagggcccgtcg
atggcagctcgcgagatgttcttgtcgacgctcaacaagatgcggcagcggcttcagcgc
gacaatgtggcgcagatcgccgtgttagaggtggtccctgcgaacaacgaagtcgtcgca
cggaaatcgcagtcggggccgctgatctgtatcgcgaacgtgcatattttctccaatccg
aagttccctgacgtcaagatgtggcagacaaatatgctcgcgaagcagcttgagcgggtg
acgctgagtcgcaacttgcccacgattctttgcggggactttaatagcgaacctactagc
gcagtgtacgaatttatgacgcgcaaccacgtgccgctggaccacccagacatccaatac
ccgccgccgctgatcgcgaacatctatgcgtcgctggatctggagcacagcatcggcttt
gccagtgcgtatgcatccgtgtttggcgccgagccggagtacacgaattacacaggtcac
tggacaggggtcgtcgactacgtatggtatacaccggagacgctgacgccgttcgccgga
ctgaaggtgcacccgcccgaagtgctcgaggcgtactcgaagacggcgctgcccaactgc
cagttcctgtcggaccacgttcctctgttcggaccacaaagtggctctcttacaaacacc
aagtcaaatcatgtcgcactagcgtccccatctggctgctgccacacacccgtcccctct
gagcaaaagacttcacttcacctcactcctcgagctcgaacgatgcagacgtcgcaggtg
tacgcggtggaccgcgtgtacggcgacctgcagccgcagttcgtggccaaggacgtgctc
aaggcgctgtcccagctggacgccgtggtcggggacgtgttcaaccgcctggcgcacaag
gtctcgcaggagaaggagcgcgtggccgccgtggacgcgcgcatccaggtgtgccaagcc
aaggtgaacgcgctcacggcgcggcgcacgagcaacaagcccacgaccgtcttctccacg
tccaagtacccggcccccaggcagctgccgctctccaggacgctgttccacgacaagccg
tacgccgacgcgccgccgctcgtgcccgacgcggacgacgacacgcacttcctgccggcc
gagccgctgccccccgcgcagcgaggccagcacatggccgaggtcgtggagctcttcgag
aaggtcaacgagtaccagaagacgcagcagcccgaggccgacatggagaaggagggcctc
ggccgactgcccgagtacatcccgtccgtgggcagcgtgctgctcttcaactctggggag
aacccgtaccagaagtacacgtcatgggacaacttgctggggacggactacgaggaggag
gaggagaagcggaaggagctggccaaagccccgcgtaccattgaatacggagacgagctg
ccggccgtgcacggactcaactacgagttccacccgtcgatgggcatcatgccggacatg
tcggcgaagctgccgacgaacctgccgctcgagaacatcgccgactacaagtacgcgcag
gagagcaacacgtcgatcgcgccctccatgttccaggacaaggcgctcccggacctgcct
gcggtcgcgaactttgcagagggaccagtcgcacaggagccatcggagcagaacttccaa
gtgggccccgtcgacggcgctccacctccacctccaccggcgccgacagttgacttcacg
aaaatcgacgacggtgcacccccgccgccgccaccgcctccccccgctcaagaagacgaa
gaggacgactcggccccgccaccgcccccgccacctatggctaacagtgaagacgaagac
gcgccccctccaccaccgccgccgcaagaggacggacctccggcacctccggctcctgag
gaggaagataaccagccaccgatcgttagcttgctggatcagattcgaaaccccaacatc
aagctcaaaaaggtggacccgaacgaaaaaaaggacgaccccattgcaaaggcaggagat
accgctaacaaaccgctaacaatcgccgaagaaatgcagcagcgaatgctgcggcgacag
gctgctatcagcggcaagcaggaccagatggagcagaagcgtgagcgagagaaggccgcc
gcgaagcccgtgacggtgctgacagcgaaggaggtgacggctccaacccagcctccgcct
ccgccacctccgtctgacgacggtcagcagcacaataagctaccgacgcttgcgatgtcg
gacgatggcagtgacgacggtcgtggcaacatctccgacgacgacaagtcgaacgatggt
gacgatttcttggcccaaattcggaacatcaagaaaaaacaagaggagggtggtccaaac
acgcaaccacgacagccgccaccaccacccaaaacacaagaaatcaagaatccagtggcg
gacttcgaatcgcaaatgatcggactacggaaccgtgaggactccttgagcatgtctgaa
gcctcggattggtcggacgactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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