KEGG   Pseudoalteromonas spongiae: PSPO_b0841
Entry
PSPO_b0841        CDS       T05098                                 
Symbol
rnd
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
pspo  Pseudoalteromonas spongiae
Brite
KEGG Orthology (KO) [BR:pspo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pspo03016]
    PSPO_b0841 (rnd)
Enzymes [BR:pspo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     PSPO_b0841 (rnd)
Transfer RNA biogenesis [BR:pspo03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    PSPO_b0841 (rnd)
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNAseD_HRDC_C HRDC DNA_pol_A_exoN
Other DBs
NCBI-ProteinID: ATD00797
UniProt: A0A290T9B2
Position
II:781335..782462
AA seq 375 aa
MQYSFITEQQELDSAVASYNNKSVLAVDTEFMRRRTLYPELALLQIYDGDRICLIDPTLD
LDLSSFWQLMENPNIIKVLHSPSEDLEVFARHGNCTPAPLFDTQFALSLLGERNCVGFAN
MVEMLLEEQIDKSESRTNWLQRPLTKAQLDYAAADVFYLMPCFNIIKEKLNDDKQGIVFG
ESAVIANKRKYETPLELAYLDIKNAWQLNPKQLAVLQQLAAWRLNRAREKNLALNFIVKE
HILFEIAKTQPTHFGALKRLCEGDQGLLNRYGKTLLNLVKIGLDKDEAEHPEKIQRLIDF
HGYKKTLKELRAELEKIAKDNDIPLDVLASKKQMNQLISWKWKGKSKFDEGALLKPDLMT
SWRGEMVKHSLKDWF
NT seq 1128 nt   +upstreamnt  +downstreamnt
gtgcaatactcatttattacagaacaacaagaattagactcagcggtcgctagctataac
aacaaatcggtactcgcggtagataccgagtttatgcgacgtcgcaccctttacccagag
cttgcattattgcaaatttacgacggtgatcgtatttgccttattgatccaacgttagat
cttgatttgtcatcgttttggcagctaatggaaaatccgaatattataaaagtgttgcat
tcgccatctgaggatcttgaagtatttgcacgccacggtaattgtactccagcgcccttg
tttgatactcagtttgcattaagtttattaggcgaacgcaattgtgttggttttgccaat
atggttgaaatgttacttgaagagcaaatcgacaaaagtgaatcgcgcactaattggttg
caacgccccttaacgaaagcccagttagattatgcagctgccgatgtattttatttaatg
ccttgttttaacattattaaagaaaaactaaatgacgataagcaagggattgtgtttggt
gaaagtgcggttattgctaataaacgcaaatatgaaacgccgttagaacttgcctatcta
gatattaaaaacgcgtggcaacttaacccgaaacaattagctgtgctgcagcagttagca
gcttggcgcttaaatcgcgcccgtgagaaaaacttagcacttaactttatcgttaaagag
cacattttattcgagatagctaaaacgcagcctactcattttggtgcactaaaacgttta
tgtgaaggcgaccaaggcttacttaatcgttatggtaaaaccttgttaaatcttgtgaaa
atcggtttagataaagacgaagccgagcatccagaaaaaatccaacgcttaatagacttt
catggctataaaaaaacgttaaaagagctacgtgctgagcttgaaaaaatcgccaaagac
aatgatattccacttgatgtgctagcaagtaaaaagcagatgaatcaattgatcagctgg
aagtggaaaggcaagtctaagtttgacgaaggtgcgctcttaaaacccgatttaatgacg
agttggcgcggtgaaatggttaagcattcactaaaagactggttttaa

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