KEGG   Pandoraea sputorum: NA29_23630
Entry
NA29_23630        CDS       T03554                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
pspu  Pandoraea sputorum
Pathway
pspu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pspu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NA29_23630
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pspu03019]
    NA29_23630
   03400 DNA repair and recombination proteins [BR:pspu03400]
    NA29_23630
Enzymes [BR:pspu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     NA29_23630
Messenger RNA biogenesis [BR:pspu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     NA29_23630
DNA repair and recombination proteins [BR:pspu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      NA29_23630
SSDB
Motif
Pfam: RQC HRDC DEAD Helicase_C RecQ_Zn_bind NepR
Other DBs
NCBI-ProteinID: AJC18198
UniProt: A0A239SQW5
Position
4435187..4436995
AA seq 602 aa
MASALEVLRTVFGYNAFRGDQAAIVDHVADGGDALVLMPTGGGKSLCYQIPALLRPGIGI
VVSPLIALMQDQVDALLQAGVRAAYLNSSLAFDEAVDIERRAARGELDLLYVAPERLLTD
RFLNLLDRLDERGQLALFAIDEAHCVSQWGHDFRPEYIQLSALHERYPRVPRIALTATAD
AATREEIQTRLGLTDARLFVSSFDRPNIRYEIVDRDNPRKQLLAFLSRHRGEAGIVYCLS
RKKVEETAAWLETQGIPALPYHAGLDAEVRRTHQQRFLREEGLVMAATVAFGMGIDKPDV
RFVAHLDLPKSLEAYYQETGRAGRDGEPAEAWMTYGLNDVVVHRSRIDESNAPDLQKRIE
RQKLDALLGYCEAPRCRRTVLLSYFGESSEPCGNCDVCLNPPEVFDGTIAAQKALSAILR
TGQRFGAGHLVDLLRGRSTDKIRQFGHESLPTFGVGGEMDDQGWRAVFRQLIAHGIIEPD
SSQYGALTLNAAARPVLKGETVVSLRRQRPTAGKKSRFAGYASSQAIELDTADQQLFEKL
RTWRQEMAKTQAVPAYVILHDRTLRELAQRRPRHREGLVDITGLGEAKIERYGEALVELL
NA
NT seq 1809 nt   +upstreamnt  +downstreamnt
atggcaagcgcactcgaagttctccgtaccgtattcggctataacgcattccgtggcgat
caggccgccatcgtcgaccatgtggccgacgggggcgatgcactcgtgctcatgcccacg
ggcggcggcaagtcactgtgctaccagatccctgcgctgttgcgcccgggcatcggcatc
gtcgtctccccgctcattgctctcatgcaggatcaggtcgacgctttgctgcaagccggg
gtccgcgccgcctatctgaattccagtctcgccttcgacgaagcggtcgatatcgaacgc
cgcgccgcgcgaggcgaactcgatctgctgtacgtcgcgcccgaacggctgctgaccgac
cgcttcctcaatctgctcgaccggctcgacgaacgcgggcaactggcgttgttcgccatc
gacgaggcccactgcgtctcgcaatgggggcatgacttccgtcccgagtacatccagctc
tcggcgctgcatgagcgttatccgcgtgtgccccgcattgcgctcacggccacggcagac
gccgcgacgcgcgaggaaatacagacgcggctcggcctgaccgacgcgcgcttatttgtc
tccagcttcgaccgaccgaatatccggtacgaaatcgtcgaccgcgacaacccgcgcaag
cagttgctggcctttctgagtcggcatcgcggcgaagcgggcattgtctactgcctgtcg
cgcaagaaggtggaagaaacggccgcgtggctggaaacgcaaggcattccggcgctgccg
tatcacgcggggctggacgccgaggtgcgccgcacgcaccagcagcgtttcctgcgagag
gaagggctggtcatggccgcgaccgtcgccttcggcatgggcatcgacaagccggacgtg
cgcttcgtcgcccatctggacttgcccaagagcctcgaagcctattatcaggagacagga
cgcgccgggcgcgacggcgaaccggccgaagcctggatgacctacggcctgaacgacgtg
gtggtccaccgcagccggatcgacgagtcgaacgcgccggaccttcagaagcgcatcgag
cgccagaagctagacgccctgctcggctactgcgaagccccgcgctgccgccgcacggtg
ctcctgtcgtacttcggcgagtcgagcgagccatgcggcaactgcgacgtctgcctgaat
cccccggaagtcttcgacggtacgatcgcggcgcaaaaggcgctgtcggcgatcttgcgt
acgggccagcgctttggcgcaggccatctggtcgacctgctgcgcggacgcagcacggac
aagattcgtcagttcggccacgaaagcttgccgaccttcggggtgggcggcgagatggac
gatcagggctggcgggcggtgttccgtcaattgatcgcccacggcatcatcgaaccggac
agcagtcagtacggagcgctcacgcttaatgcggcggcgcgtccggtgctcaagggcgag
acggtcgtgtcgctgcgacgccagcgtcccacggcgggcaagaagagccggtttgccgga
tatgcgtcgtcgcaggccatcgaactggatacggccgatcagcagttgttcgagaagctt
cgcacatggcgtcaggaaatggcgaagacgcaggccgtcccggcctacgttatcctgcac
gaccgtacgctgcgagagctcgctcagcgccgcccgcgtcaccgcgaaggactggtcgat
atcaccggactcggagaagcgaagatcgagcgttacggcgaagcgctcgtcgaactgttg
aacgcctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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