KEGG   Pelodiscus sinensis (Chinese soft-shelled turtle): 102461623
Entry
102461623         CDS       T02980                                 
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4
  KO
K13126  polyadenylate-binding protein
Organism
pss  Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03015  mRNA surveillance pathway
pss03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pss00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102461623 (PABPC4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102461623 (PABPC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pss03019]
    102461623 (PABPC4)
   03041 Spliceosome [BR:pss03041]
    102461623 (PABPC4)
Messenger RNA biogenesis [BR:pss03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     102461623 (PABPC4)
   mRNA cycle factors
    Stress granule specific factors
     102461623 (PABPC4)
Spliceosome [BR:pss03041]
 Complex C
  Other components
   Complex C specific factors
    102461623 (PABPC4)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 RRM_occluded RRM_3 NOP5NT
Other DBs
NCBI-GeneID: 102461623
NCBI-ProteinID: XP_006139196
Ensembl: ENSPSIG00000016892
UniProt: K7GFE8
Position
Unknown
AA seq 630 aa
MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPAGNAQASRGLPAA
AQRVGVATAAQNLAPRPPVTVPAPRAVPPYKYASAVRSPHPAVQPLQAPQPAVHVQGQEP
LTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLR
SKVEEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq 1893 nt   +upstreamnt  +downstreamnt
atgaatacagctgctagtagctacccaatggcatcattgtatgttggcgatctgcatcct
gatgtcacagaggccatgttatatgagaagttcagccctgctgggcctgtactctccatc
cgagtctgccgggatatgatcacccgtcgctccctgggatatgcctatgtcaacttccag
cagccagctgatgctgagcgtgctctagacaccatgaactttgatgtgatcaaaggcaaa
cccatccgcattatgtggtctcagcgggacccgtccctgaggaagtcaggggttgggaac
gtcttcatcaagaatctggataaatccatagacaacaaggcactttatgacacattctca
gcatttgggaatattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcatttgtgcactttgagacccaggatgctgcagacagagccatcgagaagatgaacggc
atgctgctaaacgaccgcaaagtatttgtcgggagattcaagtcccggaaggagcgggag
gctgagctgggagccaaggcaaaggagttcaccaatgtttacattaaaaactttggggat
gacatggatgatgagagactaaaagagctcttcagcaaatacggcaagacgctgagtgtg
aaggtgatgaccgatcccactggaaagtccaaaggttttggcttcgtgagctttgaaaaa
catgaagatgccaacaaggcagtggaagaaatgaatggcaaagatatcaatggaaaaatg
gtatttgtagggcgggcacagaagaaggtagagcgtcaggcagagctgaaacggaagttt
gagcagctgaaacaagagagaatcagccggtaccagggtgtcaacctgtacattaagaac
ctcgacgacactattgacgatgagaaactgaggaaggagttttcaccttttgggtctatc
acaagtgccaaggtgatgctggaggatggacgaagcaaaggatttggcttcgtctgcttt
tcctctccggaagaagccaccaaagccgtgactgagatgaacgggcggatcgtgggctcc
aagcccttgtacgtggcgctggcacagaggaaagaggagcgaaaagcccacctcactaat
cagtacatgcaacgcatcgctggaatgagagccctgcctgccaacacaatcattaaccag
ttccagccagcggctggggggtacttcatgcccgctgtgccccaggctcagagcagaccc
acttactatgcacccaatcagatgacgcagatgagacctaacccgcgctggcagcaaggg
gggagacctcaaggcttccaaggcatgccgaatgccatgcgccagtccggcccccgccca
gcactgcgccatctggctcccgctggcaatgcccaggcctctcgtggcctccctgctgct
gcccagagagttggcgtggccactgcagcccagaatttagctcctcgtccgcctgttact
gtcccggctcccagagccgttcctccttataaatatgcctcagctgtccgcagccctcac
ccagcagtacagcctttgcaggcccctcagcctgcggtgcacgtacaaggacaggaacct
ttaacggcttccatgctagctgctgcccctccccaggagcagaaacagatgctgggagaa
cgcttgttccccctgatccaagctatgcaccccagcctcgcggggaagattacaggaatg
ctgctagagattgacaattcagagctactgcacatgctggagtctccggaatccctccga
tcaaaggtggaagaggctgttgccgtgctgcaggctcaccaagcgaagaaagaagctgcc
cagaaggtgggcgtggttgctgctacctcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (64)   
   KEGG ORTHOLOGY (1)   
   RefGene (59)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (80)   

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