KEGG P.syringae: PSPTO

Pseudomonas syringae pv. tomato DC3000: PSPTO_0443

Entry

PSPTO_0443 CDS P.syringae

Gene name betA

Definition choline dehydrogenase

Orthology K00108 choline dehydrogenase [EC:1.1.99.1]

Pathway pst00260 Glycine, serine and threonine metabolism

Class Metabolism; Amino Acid Metabolism; Glycine, serine and threonine
metabolism [PATH:pst00260]

SSDB

Motif Pfam: GMC_oxred_N GMC_oxred_C DAO FAD_binding_2 Lycopene_cycl
Pyr_redox_2 ApbA Thi4 HI0933_like
PROSITE: GMC_OXRED_1 GMC_OXRED_2

Other DBs NCBI-GI: 28867673
NCBI-GeneID: 1182052
JCVI-CMR: PSPTO_0443
UniProt: Q88AE7

Position 487268..488974

AA seq 568 aa
MTTQSEYDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQ
GRRYNWAYETEPEPHMDNRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKEPGLEDW
SYLDCLPYFRKAETRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGFPRTDDL
NGYQQEGFGPMDRTVTPKGRRASTARGYLDEAKKRDTLSIVTHALTDRILFEGKRAVGVA
YLVGDSDTRIEVRARKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNL
QDHLEMYLQYACTQPVSLYPSLKWWNQPAIGAEWMFLGTGIGASNQFEAGGFIRSSEAFE
WPNIQYHFLPVAINYNGTKGVQEHGFQAHVGSMRSPSRGRVHVKSKDPREYPSILFNYMA
SDQDWQEFRDGIRLTREIMQQPALDPYRGREISPGIDVQSDEALDQFVREHAETAYHPSC
SCKMGTDEMAVVDGQGRVHGMQNLRVVDASIMPIITTGNLNAPTIMIAEKIADKIRGRQP
LPRSTADYFVAGDKPARGKPLREISHQA

NT seq 1707 nt +upstreamnt +downstreamnt
atgaccacgcaatccgaatacgactacatcatcattggtgccggctctgccggtaacacc
ctggcagcccgtctcaccgaagacgcaggcgtcactgttctactgctcgaagccggtggc
ccggactatcgtctggacttccgtacccagatgcccgccgccctggcgttcccgttgcag
ggccgtcgctacaactgggcctacgagaccgagccagagccgcacatggacaaccgccgt
atggaatgcggtcgcggcaagggcctgggcggttcgtcgctgatcaacggcatgtgctac
atccgcggcaacgcgatggactacgacggttgggcgaaagagccgggcctcgaagactgg
agctacctcgactgcctgccgtactttcgcaaggctgaaacccgtgacatcggcccgaac
gattaccacggtggcgaaggcccggtcagcgtgaccacgcccaaggccggtaacaatccg
ttgttccacgcgatggtcgaggcgggcgtgcaggccggtttcccgcgcaccgacgacctc
aacggttatcagcaggaaggcttcggtccgatggaccgcaccgtgaccccgaaaggccgt
cgcgccagcactgctcgcggttacttggacgaagcgaaaaagcgtgacacgctgagcatc
gtcacacacgcgctgaccgaccgcattctgttcgaaggcaagcgcgctgtgggtgtggcc
tatcttgtgggtgacagcgacacgcgcattgaagtccgtgcccgcaaggaagttttactg
tgtggcggcgccatcgcttcgccgcagattctgcagcgctccggtgttggcccggccgag
gtcctgaacaagctggatattccagtggttcatgatcttccgggtgtgggtcagaacctt
caggatcacctggagatgtacctgcaatacgcctgcacccagcctgtgtcgctttaccct
tcgttgaagtggtggaaccagcctgccattggcgcagagtggatgttcctcggcaccggt
atcggcgcgagcaatcagtttgaagccggtggtttcattcgttccagcgaagcctttgag
tggccaaacattcagtatcacttcctgccggtcgcgattaactacaacggcaccaagggt
gttcaggaacacggcttccaggcgcacgttggctcgatgcgttcgccaagccgtggtcgc
gtacacgtcaagtccaaggacccgcgtgaatacccaagcattctgttcaattacatggca
tcggatcaggactggcaggaatttcgcgacggcatccgcctgacccgcgagatcatgcag
caaccggctctcgatccgtaccgcggccgcgaaatcagcccgggcatcgacgtgcagtct
gacgaagcgctggaccagttcgtgcgtgaacatgccgaaacggcgtatcacccatcttgc
tcctgcaagatgggcaccgacgaaatggctgtggtcgatggtcagggccgtgtgcacggc
atgcagaacctgcgtgtggtggatgcctcgatcatgccgatcatcaccaccggcaacctg
aatgcgccgacgatcatgatcgccgagaaaatcgccgacaagatccgtggccgtcagccc
ctgccacgcagcaccgccgactacttcgtcgcaggcgacaagccagcacgcggcaagccg
ctgcgtgagatcagccaccaggcctga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JCVI-CMR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (11)   
   Pfam (9)   
   PROSITE (2)   
All databases (23)

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