KEGG T00118: PSPTO

Pseudomonas syringae pv. tomato DC3000: PSPTO_0778

Entry

PSPTO_0778 CDS T00118

Gene name

recD

Definition

exodeoxyribonuclease V subunit alpha

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

pst Pseudomonas syringae pv. tomato DC3000

Pathway

pst03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:pst03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 Helicase_RecD AAA_19 AAA_11 AAA_22 Viral_helicase1 DUF2075 PhoH AAA_28 UvrD-helicase NTPase_1 AAA_16 AAA_25 AAA_17 AAA_5 NACHT AAA_18 AAA_33 T2SE

Other DBs

NCBI-GI:

NCBI-GeneID:

JCVI-CMR:

UniProt:

Position

840139..842232

AA seq 697 aa
MSRSFDDLLPTALDDISLADLSPLTRADDLLMLLERWVERGWLRALDRAFVAFLSDLDPQ
ADPLVLVAAALTSHQLGHGHVCLDLYETLKEPDFALSLPPEGDQQDGAMLLPSQLLAALD
GAAWCQALARSMLVAQATDSSAEALQKPLVLAERRLYLRRYWTYERRIAAALRRRLEQAD
APPDDLPQRLNALFGPANSAPDAIIDWQKLACALATRRAFSIITGGPGTGKTTTVVRLLA
LLQAPAVQSGQPLRIRLAAPTGKAAARLTESISQQVQSLDVSAEVRQKIPSEVTTVHRLL
GSRPGTRHFRHHAGNLLPLDVLVVDEASMIDLEMMANLLDALPPHARMVLLGDKDQLASV
EAGAVLGDLCRDAEDGFYSPQTQTWLEAVSGEDLSKGTLRQGDAQQHPLAQQVVMLRHSR
RFGQGSGIGQLARLVNQQQDQQARALLSAGSHTDLFALALKGEQDLKFERLVLEGLGQGE
QGPQGYRHYLNVLGAERPAVGAELDDECWTRWARSVLDAFDSFQLLCAVRKGPWGVEGLN
QRITHALFNAQLIESDQQWYEGRPVLMTHNDYGLGLMNGDIGITLRLPERDGEGKQVLRV
AFPRNDGSGGVRFVLPSRLNEVETVYAMTVHKSQGSEFAHTALILPEALNPVLTKELIYT
GITRAKHWFSLIEPRQGIFEEALRRKVKRLSGLMLGL

NT seq 2094 nt +upstreamnt +downstreamnt
atgagccgttcgttcgacgatctgttgcccactgcgctggacgacatcagcctcgccgac
ttgagcccgttgacccgcgccgacgatctgctgatgctgctggaacgctgggtcgagcgc
ggttggttgcgcgccctggaccgggcttttgtcgcgttcctcagcgacctcgacccgcag
gccgatccactggtgctggtcgctgcggccctcaccagccatcaactgggccacggccat
gtctgcctcgatctttacgagaccttgaaagagccggacttcgccttgtcactgccgccc
gaaggtgatcagcaagacggggcaatgctgctgccctcgcaattgctggcagcgctggat
ggcgcagcgtggtgccaggcgctggcgcgcagcatgctggtcgcgcaagccacagactca
agcgccgaggcgctgcaaaaacccttagtgctggcagaacgacgtttgtacctgcgccgc
tactggacctacgaacgccgcatcgctgcagccctgcgtcggcgtctggagcaagccgat
gctccgcccgacgatctgccgcagcgcctgaacgctttgttcgggcctgcgaactcagcg
ccggacgccatcatcgactggcagaaactggcctgcgcactggcaacccgccgggcattc
agcatcatcaccggcggccccggcacgggcaaaaccaccaccgtggtgcgcttgctggcg
ttgcttcaggctcctgccgtgcagagcggccagccgctgcgcattcgtttggcagcgccg
accggcaaggcggcagcacgtctgaccgaatccatcagccagcaagtgcaaagcctggac
gtcagcgccgaggtgcggcagaaaatccccagtgaagtcaccaccgtgcaccgcttgctg
ggcagccgccctggcacgcgccatttccgtcaccacgcaggtaacttgctgccactggac
gtgctggtcgtcgacgaagcgtccatgatcgacctggaaatgatggccaacctgctcgac
gcactgccgccgcacgcgcgcatggttctgctcggcgacaaagaccaattggcttccgtc
gaggcgggcgcggtactgggtgatttgtgtcgcgacgccgaagacggcttctacagcccg
caaacccagacctggctcgaagctgtcagcggcgaagacctcagcaaaggcacattgcgc
caaggcgatgcgcagcaacatccactggcccaacaagtggtcatgctgcgccactcgcgc
cgttttggccaaggcagcggcatcggccagttggcccggctggtcaaccagcaacaggat
caacaggcgagggcgctgctgtcggcaggcagtcacaccgatctgttcgccctggcgctc
aagggcgagcaagacctcaagttcgagcggctggtgctggaaggccttggccaaggcgag
caaggcccgcagggttataggcattacctgaacgtgctcggcgccgagcgcccggcagtc
ggcgctgaactggacgatgaatgttggacccgatgggcacgctcggtactcgacgccttc
gactcgttccagttgctctgcgctgtacgcaaaggcccgtggggcgtagaaggccttaac
caacgcatcacccatgcgttattcaatgcgcagctgatcgaaagcgatcagcagtggtac
gaaggccggccagtcctgatgacccacaacgactacggcctgggcttgatgaacggcgac
atcggcatcaccttgcgattgcccgagcgcgatggcgagggcaaacaggtcctgcgcgtc
gccttcccgcgcaacgatggcagcggcggcgtgcgcttcgtcctgcccagccgcctcaac
gaagtcgaaaccgtctacgccatgaccgtgcataaatcccaaggctcggaattcgcccac
accgccctgattctgcccgaagccctcaacccggtactgaccaaagaactcatctacacc
ggcatcacccgcgccaaacactggttcagcctgatcgaaccgcgccagggcatcttcgag
gaagccctgcgccgcaaagtcaaacgcctgagcggcttgatgctcgggctttga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JCVI-CMR (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (20)   
   Pfam (20)   
All databases (30)   

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