KEGG   Pseudomonas syringae pv. tomato DC3000: PSPTO_4316
Entry
PSPTO_4316        CDS       T00118                                 
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
pst  Pseudomonas syringae pv. tomato DC3000
Pathway
pst03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pst00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    PSPTO_4316 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pst03400]
    PSPTO_4316 (sbcB)
Enzymes [BR:pst01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     PSPTO_4316 (sbcB)
DNA repair and recombination proteins [BR:pst03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     PSPTO_4316 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     PSPTO_4316 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PSPTO_4316 (sbcB)
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T
Other DBs
NCBI-ProteinID: AAO57767
UniProt: Q87X72
Position
complement(4866365..4867795)
AA seq 476 aa
MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI
TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR
EWQGGNSRWDLIDVVRAAYALRPEGIVWPEQDGRVTLKLERLTAANGIDHGQAHDALSDV
RATIALARLIREKQPRLYDYLFTLRTKQKVQEHIHLMKPLVHISGRFSAARSYLGVVLPL
AWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINRCPV
IAPLGVLRSEDQQRLKLDMAGYQARAAQLSESLEVWQDKLQVLYGKDDFVASEDPEQQLY
DGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSADEQHRWQ
DFCRQRLSSPEWGAPTTLQDFTSALNECSLSATPEQLEVLRQWQDHALQLSKRLGV
NT seq 1431 nt   +upstreamnt  +downstreamnt
gtgacttccagcattttctggtacgactacgaaaccaccggtatcaacccgcgcaacgat
cgagcgctacagatggcgggaattcgcaccgatgccgagctcaatgaaatagcgcctccg
gtcaatctttactgccagcccagcgacgacattctgccccatcccgcagcctgtgtgatc
accggcataacccccgccacgctggcagaaaaaggcttgtgcgaggcggacttcatgact
cgcgtgcacgccgagcttgctgcgcccggtacatgcggtgccggctacaatacgttgcgt
ttcgacgacgaagtcacccgctacagtttttatcgcaactttttcgatccttatgcgcgc
gagtggcagggcggcaatagtcgctgggatttgattgatgtagtgcgcgcagcctatgca
ttacgtcccgagggcattgtctggcccgaacaggacgggcgagtcacgctcaaactggaa
cgcctgaccgctgccaacggtattgatcacgggcaggcccatgatgcgttatccgatgtg
cgtgcaactatcgctctggcgcgtttgattcgcgaaaaacagcccaggctttatgactac
ctgttcacgctgcgcaccaaacagaaagtccaggagcacattcacctgatgaaacctctg
gtgcatatttccggacggttttccgcggcacgcagttatctgggcgtggtactgccgctg
gcgtggcatccgcataatcgcaatgcgctgatcgtttgtgatctgcacctggatcattcc
ccgttgttgcagtgcgacgctgaaacgctcaagcagcgcttatatacccggcttgacgca
ctgaaggaaggcgaattgccggtaccgctcaaactattgcatataaaccggtgcccggtg
atcgcgcccttgggcgtactgcgcagcgaagatcagcagcggctgaaactggacatggca
ggctatcaggcgcgcgcagcgcagttgagtgaaagcctcgaagtttggcaggataaattg
caggttctgtacggcaaggatgacttcgttgcaagtgaagatcccgagcaacaattatat
gatggctttatcggtgaccgtgatcgccggttgtgtgagcaagttcgacaggccgagcct
gaacagttggcccgtgacgcatggccgtttgatgacgctcgcttgcccgatttgttattc
aggtaccgcgctcgcaactttcccgagaccttgagcgccgacgagcaacatcgttggcag
gatttctgtcggcagcgcctgagcagcccggaatggggggcgcccactaccttgcaggat
tttaccagcgcgctgaatgaatgctcgcttagtgccactccagagcagttggaggtgttg
cggcaatggcaggatcatgcccttcaactgagtaaacgcctgggtgtataa

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