KEGG T01403: Psesu

Pseudoxanthomonas suwonensis: Psesu_1057

Entry

Psesu_1057 CDS T01403

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

psu Pseudoxanthomonas suwonensis

Pathway

psu03410	Base excision repair
psu03420	Nucleotide excision repair
psu03430	Mismatch repair
psu03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:psu03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:psu03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:psu03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:psu03450]

SSDB

Motif

Pfam:

DNA_ligase_OB_2 DNA_ligase_A_M

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(1199425..1200288)

AA seq 287 aa
MRFLLLALLCLLPASVLPAVPPTTAPAPAPMLASTWRGGLAVDAFLVSEKLDGVRARWDG
RRLWTRGGAPIVPPAGFTRGWPSQPMDGELWAGRGRFEEVSALVRRSSGDARDWDSVRFM
LFDLPAHPGSFARRVQYMRELVAKARSPTLAMIEQRRIATTAALDAELARVVAAGGEGLM
LHRADALYRPGRSDALFKYKPHADAEAQVVAHLPGKGRLEGRLGALQVRTPDGRSFRIGS
GFSDAQRADPPPIGSWVTYRYSGLTSKGLPRFPRFLRIRHELPPADP

NT seq 864 nt +upstreamnt +downstreamnt
atgcgtttcctgctgctcgccctgctctgcctgctgccagcttccgtgctgccggccgtc
ccccccactacggcgcccgcgcctgctccgatgctggcctcgacctggcgcggcgggctc
gcggtggacgccttcctggtcagcgagaaactggacggcgtgcgtgcccgctgggatggc
aggcggctgtggacccgcggcggcgcgcccatcgttccacctgccggcttcacccgcggc
tggccttcccaaccgatggatggcgagctgtgggccgggcgtggccgcttcgaggaagtc
agcgcgctggtgcgccgcagtagcggcgacgcgcgcgactgggacagcgtgcgcttcatg
ctgtttgacctgcccgcccaccccggcagcttcgcccggcgcgtccagtacatgcgcgag
ctggtcgccaaagcgcgcagcccgaccctggccatgatcgaacagcggcgcatcgccacg
accgcggcgctggatgccgaactggcgcgggtggtggccgcgggcggcgagggcctgatg
ctgcaccgggccgatgcgttgtaccggcccggccgcagcgacgcactgttcaagtacaag
ccgcacgcggacgccgaggcccaggtcgtcgcacacctgcccggcaagggccgccttgag
gggcgcttgggtgcgctgcaggtgcgtaccccggacgggcgcagcttccgcatcggcagc
ggcttcagcgacgcgcagcgcgccgatccgccgcccatcggcagctgggtcacctaccgc
tacagcggcctcaccagcaagggactgccacgcttcccgcgtttcctgcgtatccgccat
gagcttccaccggcggatccgtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-PSU (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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