KEGG T01403: Psesu

Pseudoxanthomonas suwonensis: Psesu_1418

Entry

Psesu_1418 CDS T01403

Definition

DNA ligase D

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

psu Pseudoxanthomonas suwonensis

Pathway

psu03410	Base excision repair
psu03420	Nucleotide excision repair
psu03430	Mismatch repair
psu03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:psu03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:psu03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:psu03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:psu03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1565260..1568058

AA seq 932 aa
MSLVDYRRKRSFDRTREPEPGKPAPRGQRPIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPSVKRMAVEVEDHPLDYAGFEGDIPKGEYGGGHVARFDHGVWSTAGDPEEQLAK
GHLRFELFGDRLKGGWHLVRSGKPARQPQWLLFKDKDGWAGTLEADDLLAEVTPPPEADR
KRAGSGKAKPRRLAAVPAPRARRKDWKKRALALDGSRAADAPDGPFQPQLARLGQAAPEG
EQWLHEIKWDGYRILATVEEGEVRLWSRNALEWTDRVPEIRDAVKALGLRSAALDGELIA
GSGTREDFNLLQATLSGERPGTLAYVLFDLLHVDGVDITEASLLERKELLQAVLEKGPAH
LAYSSHIPGDGRQAIALAAERHFEGIISKRADRPYRPGRGDDWRKTKQLASDEFAIVGYT
APQGSRTGFGSLLLARPDAKHGWRYVGRVGTGFSDEMLRELAPRLAKDTSSKPTAHVDTM
DTALRRATWVPPRMVVEVFYRGIGGQQLLRQASLKTLRPDKDIEDLYDSDRGPGVAEETV
MAAKGKAATKKTAATKGGAGKTATAKTATKKAPAREAVAKGAPTKAAKKAVKAPAEKAAA
KAAKTSASKIVGKTPGAKTGASRAATPTKASAGTSRKRATTPQDWPRLSSPTKVLFPDIR
ATKQEVWDYYAAVMDHLLPEIVGRPLSVIRCPSGTGRQCFFQKHLTAGLERVASVKLKEE
SGTNAEYLVVEDEGGLMELVQFNALEFHPWGSHADNPDHADRVVFDLDPGPDVPFAEVKK
AAVDIRRQLEALELASFLRVTGGKGLHVVVPLAPGCDWELTKRFAHGFADALARSEPDRF
VATATKSLRNRRIFVDYLRNGRGATAVASYSLRARPGAPVAMPIAWNELARLPRADVYTM
RDVPERLRRRRKDPWEGIDGLRQNLARWARDE

NT seq 2799 nt +upstreamnt +downstreamnt
atgagcctggtcgattaccggcgcaagcgcagcttcgaccgtacccgcgaaccggaaccg
ggcaagcctgcgccgcgcgggcagcgcccgatcttcgtggtccagctccaccacgccagt
cgtcgccactacgacttccgcctgcaggtcggcgatgcgctcaagagctgggccgtgccc
aaggggcccagctatgacccctcggtcaagcgcatggcggtggaagtcgaggaccatccg
ctggactacgccggcttcgagggcgatatcccgaagggcgagtacggcggcggccacgtg
gcccgcttcgaccatggcgtgtggtccaccgcgggcgacccggaggagcagctggccaag
ggccacctgcgtttcgagctgttcggcgaccgcctcaagggcggctggcacctggtgcgc
tcgggcaagcccgctcgccagccgcagtggctgctgttcaaggacaaggatgggtgggcc
ggcacccttgaggccgacgacctgctggccgaggtcacgcccccgccggaagccgaccgc
aagcgcgccggcagcggcaaggccaagcccaggcgcctggccgcggtgccggcgccgcgt
gcgcggcgcaaggactggaagaagcgcgcgctggcactggacggttcgcgcgccgccgat
gcgcccgacggtccattccagccgcagctggcacgcctgggccaggccgcgccggagggc
gagcagtggctgcacgagatcaagtgggatggctaccgcatcctcgccaccgtcgaggag
ggcgaggtgcggttgtggtcgcgaaacgcgctggagtggaccgaccgcgttcccgagatc
cgcgacgcggtgaaggcgctgggcctgcgcagcgcggcgctggatggcgagctgatcgcc
ggcagcggcactcgcgaggacttcaacctgctgcaggccacgctgtccggcgagcgaccg
ggcacgctggcctacgtgctgttcgacctgctccacgtcgacggcgtggacatcaccgag
gcatccctgctggagcgcaaggaactgctgcaggcggtgctggagaagggtcccgcgcac
ctggcctacagctcgcacatcccgggcgacggccgccaggcgatcgcgctggctgccgag
cgccacttcgaggggatcatctccaagcgcgccgatcgtccgtaccggccgggacgcggc
gacgactggcgcaagaccaagcagctggccagcgacgagtttgccatcgtcggctatacc
gcgccgcagggcagccgtaccggtttcggttcgctgctgctggcgcggccggatgcgaag
catggctggcgctatgtcggccgggtaggcaccggcttcagcgacgagatgctgcgcgag
ctggcaccgcgcctggcgaaggacaccagcagcaagccgaccgcgcacgtggacaccatg
gacaccgcgctgcgtcgcgcgacctgggtgccgccgcgcatggtggtcgaggtcttctat
cgtggcatcggcgggcagcagctgctgcgccaggcctcgttgaagaccttgcgcccggac
aaggacatcgaagacctgtacgacagcgaccgcggcccgggtgtcgcggaggagacggta
atggcggcaaaggggaaggcagccacgaagaagactgcggcgacgaaggggggggcgggg
aagaccgccaccgcgaagacggccacgaagaaggcgccggcacgcgaggcagttgccaag
ggcgcacccacgaaggctgcgaagaaggcagtaaaggctcctgcggagaaggccgccgcg
aaggccgcgaaaacatcggccagcaagatcgtaggaaagactcccggcgcgaagacgggc
gcctcccgcgccgccacgccgacgaaggccagcgccggcaccagtcgcaagcgcgcgacc
acgccgcaggactggcccaggctttccagccccaccaaggtcctgttcccggacatccgc
gccaccaagcaggaggtatgggactactacgcggcggtgatggaccacctgctgcctgag
atcgtcggacgtccgctctcggtgatccgctgtccgtccggaacgggcaggcagtgtttc
ttccagaagcacctgaccgccgggctggaacgggtggcctcggtgaagctcaaggaggag
agcggcaccaacgccgaatacctggtggtggaggacgagggtgggctgatggagctggtg
cagttcaatgcgctggagttccatccctggggctcgcatgccgacaaccccgaccatgcc
gaccgcgtggtgttcgacctggatcccggcccggacgtgccgttcgccgaggtcaagaag
gccgcggtcgatatccgccgccagctggaagcgctggagctggcgtcgttcctgcgcgtg
accggcggcaagggcctgcacgtggtggtgccgcttgcgccgggctgcgactgggaactg
accaagcgcttcgcccatggcttcgccgatgcgctggccaggtccgaaccggaccgcttc
gtcgcgaccgcgaccaagagcctgcgcaaccgccgcatcttcgtcgactacctgcgcaac
ggtcgcggcgccaccgcggtggcttcctactcgctgcgtgcgcggccgggcgcaccggtc
gcgatgccgatcgcctggaacgagctggcgcgactgcctcgcgccgacgtctacacgatg
cgggacgtgccggaacgcctgcggcgcaggcgcaaggatccctgggagggaatcgatgga
ctgcgccagaacctcgcgcgctgggccagggacgagtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-PSU (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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