KEGG   Pseudoxanthomonas suwonensis 11-1: Psesu_2341
Entry
Psesu_2341        CDS       T01403                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
psu  Pseudoxanthomonas suwonensis 11-1
Pathway
psu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:psu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Psesu_2341
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psu03021]
    Psesu_2341
   03400 DNA repair and recombination proteins [BR:psu03400]
    Psesu_2341
Enzymes [BR:psu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Psesu_2341
Transcription machinery [BR:psu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Psesu_2341
DNA repair and recombination proteins [BR:psu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Psesu_2341
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RnfC_N
Other DBs
NCBI-ProteinID: ADV28175
UniProt: E6WVH6
Position
complement(2564841..2569067)
AA seq 1408 aa
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAFVVTEPGLTPLERRQLLTEEQYLTARQEHGDDFDAAM
GAEAIYELLRTIDLQAEMARLREEIAATGSETKLKRLTKRIKLIEAFIESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRALENKKGEGMAFANVAEVKRAYDNR
TVELHAKVKVRITEVVTDENGNKQKKASIVDTTVGRALLAEILPAGLPFALANTELTKKN
ISRLINSCYRRLGLKDTVVFADQLMYTGFSFATRAGVSIGIDDMLIPDEKKGILSEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMETIGTDKVVNAKGEEVAQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTIQGLTMTPIVEGGDVVEPLKDRVL
GRVVAEDVFLPGNDEDPVVTRNTLLDEVWVNRLEEAGVQTIKVRSTITCESAFGVCSHCY
GRDLARGHLVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FTNLKSVEHAGGHLVAVSRSGEVSVLDPHGRERERYKLAYGATISVKDGAEVKAGQQIAN
WDPHNHPIVSEVAGFVRFIDFVDGITVIEKTDELTGLASREITDPKRRGSQGKDLRPLVR
IVDKDGNDLTIPGTDLPAQYLLPPRSIVNLQDGAPVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGVVSFGKDTKGKQRLIIKGAEGEEHEELIPKYRQIIVFE
GEHVTKGETIVDGEPSPQDILRLKGIEDLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDQGDSKFLNGEQVEKQRVIEENQRLVARNEIPAKYEPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDSLRGLKENVIVGRLIPAGTGLAYHSKRRRNATGLTESE
LEALSGGSEPAAVAEVAEAAPAQDDAAE
NT seq 4227 nt   +upstreamnt  +downstreamnt
atgaaagacctgctcaacctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgccctggcttcgccggacctgatccgttcgtggtccttcggcgaggtgaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgtgccgcg
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtgtgcgagaagtgcggcaccgaggtcaccctggccaaggtccgccgcgag
cgcatgggtcatatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcatcctgtac
ttcgaggccttcgtggtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtacctgaccgcccgccaggagcacggcgacgacttcgacgccgccatg
ggcgccgaggcgatctacgagctgctgcgcaccatcgacctgcaggccgagatggcccgc
ctgcgcgaggagatcgcggcgaccggttcggagaccaagctcaagcggctgaccaagcgc
atcaagctgatcgaggcgttcatcgagtccggcaaccgtccggagtggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtcccgctggacggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctggagctcaatgcgcccgacatcatcgtgcgcaacgagaagcgcatgctgcag
gagtcggtcgacgcgctgatggacaacggccgccgcggccgtgccatcaccggcaccaac
aagcgtccgctcaagtcgctggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgtac
ctgcgcctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgcggcctggccaccacgatcaaggctgccaagaagctg
gtcgagcgtgaagaggccgaggtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtgctgctgaaccgcgccccgaccctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgagggcaaggccatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtcccgctgagcctggaggcccagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctcggcctgtactacatgacccgcgccctcgagaacaag
aagggcgagggcatggcgttcgccaacgtggccgaggtcaagcgcgcctacgacaaccgc
accgtcgagctgcacgccaaggtcaaggtccgcatcaccgaggtggtgaccgacgagaac
ggcaacaagcagaagaaggcttcgatcgtggacaccacggtcggccgtgcgctgctggcc
gagatcctgccggccggcctcccgttcgcgctggccaacaccgagctgaccaagaagaac
atcagccgcctgatcaacagctgctaccgtcgcctgggcctgaaggacaccgtggtgttc
gccgaccagctgatgtacaccggcttcagcttcgccacccgcgccggcgtgtcgatcggc
atcgacgacatgctgatcccggacgagaagaagggcatcctgtccgaggccgaggccgag
gtcctggagatccaggagcagtaccagagcggcctggtcaccgccggcgagcgctacaac
aaggtggtcgacatctggtcgcgcaccaacgagcgcatcgccaaggcgatgatggaaacc
atcggtaccgacaaggtggtcaacgccaagggcgaggaagtcgcgcagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcccgtggttcgcaggcgcagatccgccagctg
gccggcatgcgcggcctgatggcccgcccggacggctcgatcatcgagacgcccatcaag
gcgaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccga
aagggcctggccgataccgcgctgaagaccgccaactccggttacctgacccgtcgcctg
gtcgacgtggcgcaggacgtggtgatcaccgaggtcgactgcggcacgatccagggcctg
accatgaccccgatcgtggaaggcggtgacgtcgtcgagccgctgaaggaccgcgtgctg
ggccgcgtcgtggccgaggacgtgttcctgccgggcaacgacgaggatccggtcgtcacc
cgcaacaccctgctggacgaagtgtgggtgaaccgcctcgaggaggcgggcgtgcagacc
atcaaggtccgctcgaccatcacctgcgaatcggccttcggcgtgtgctcgcactgctat
ggccgcgacctggcccgtggccacctggtcaacatcggcgagtcggtcggcgtcatcgcc
gcccagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcggcgtcgcgtgcggcggcggtcgacaacatcacggtcaagaccaccggttcggtgaag
ttcaccaacctcaagtcggtcgagcatgcgggcggccacctggtggcggtctcgcgttcg
ggcgaagtgtcggtcctcgacccgcacggccgcgagcgcgagcgctacaagctggcctac
ggcgccaccatctccgtcaaggacggcgccgaggtcaaggctggccagcagatcgccaac
tgggatccgcataaccacccgatcgtctcggaagtggccggtttcgtgcgcttcatcgac
ttcgtcgacggcatcaccgtcatcgagaagaccgacgaactgaccggcctggcctcgcgc
gagatcaccgatccgaagcgtcgtggctcgcagggcaaggacctgcgtccgctggtccgc
atcgtggacaaggacggcaacgacctgaccatcccgggcaccgacctgccggcgcagtac
ctgctgccgccgcgctcgatcgtgaacctgcaggacggcgccccggtgggcgtgggcgac
gtggtcgccaagatcccgcaggaagcctccaagacccgcgacatcaccggcggtctgccg
cgcgtggccgacctgttcgaggcccgcaagccgaaggaccccgcgatcctggccgagcgc
tccggcgtggtcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaagggc
gccgagggcgaggagcacgaggagctgatcccgaagtaccgccagatcatcgtgttcgaa
ggcgagcacgtgaccaagggcgagaccatcgtggacggcgagccgagcccgcaggacatc
ctgcgcctcaagggcatcgaggacctggccgcgtacctggtcaaggagatccaggacgtc
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcacccgccagatg
ctgcgcaaggtcgagatcaccgaccagggcgactccaagttcctcaacggcgagcaggtc
gagaagcagcgcgtcatcgaggagaaccagcgcctggtggcccgcaacgagatcccggcc
aagtacgagccggtgctgctgggcatcaccaaggcctcgctggcgaccgagtcgttcatc
tctgcggcctccttccaggagaccacccgcgtgctgaccgaggctgccgtccgcggcacc
cgcgacagcctgcgcggcctgaaggagaacgtcatcgtcggccgcctgatcccggccggt
accggcctggcgtaccacagcaagcgccgccgcaacgccaccggcctgaccgagtcggag
ctggaggcgctgtccggcggctccgagccggcggccgtggccgaggtggccgaggccgcc
ccggcccaggacgacgcggcggagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

Download RDF
DBGET integrated database retrieval system