KEGG   Pseudomonas sp. VLB120: PVLB_01445Help
Entry
PVLB_01445        CDS       T02897                                 

Definition
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
  KO
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
psv  Pseudomonas sp. VLB120
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:psv00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    PVLB_01445
Enzymes [BR:psv01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     PVLB_01445
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     PVLB_01445
DNA repair and recombination proteins [BR:psv03400]
 Prokaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     PVLB_01445
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
Position
334823..335635
Genome map
AA seq 270 aa AA seqDB search
MPELPEVETTRRGIEPHLVGQRVSRVVVRDRRLRWPIPEDLDIRLSGQRILSVERRAKYL
LINAEVGTLISHLGMSGNLRLVELGAPAAKHEHVDIELESGLMLRYTDPRRFGAMLWSLD
PFNHELLLRLGPEPLTDLFDGERLFQLSRGRSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRREAGGISRARYLKLAIEIKRVLAAAIEQGGTTLRDFIGGDGQPGYFQQELFVYGR
GELPCKVCGTTLREVKLGQRASVYCPRCQR
NT seq 813 nt NT seq  +upstreamnt  +downstreamnt
atgcctgagttaccagaagtcgagacaacccgacgtggcatcgagccccatctggttggc
cagcgtgtcagccgggtagtcgtgcgtgatcggcggctgcgctggccaatccctgaggat
ctggacatacgcctttcgggccagcgcatcctcagcgtggagcgacgcgccaagtacctg
ctgatcaacgcagaggttggcaccttgatcagccaccttgggatgtcggggaacttgcgc
ctggtcgaattgggggcgccggcggccaagcatgagcatgtcgacatcgagctggaatcg
gggctgatgctgcgctacaccgacccgcgccgcttcggcgcgatgctctggagcctcgac
ccgttcaatcacgaattgctattgcgcctggggccggagccgctgaccgacctgttcgat
ggcgagcgcctgttccagctttcccgcgggcgctcgatggccgtgaaaccattcatcatg
gacaacgccgtggtggtaggggtgggcaacatctacgccaccgaggcgctgttcgccgcc
ggtatcgacccacgcagagaggcgggcggcatctcgcgggcccgttacttgaagctggcc
atcgagatcaaacgggtgctggccgcagccatcgaacaaggtggcacgacgctgcgcgac
ttcatcggtggcgacgggcagcctgggtacttccagcaggagctgttcgtgtatggccga
ggcgaactgccgtgcaaggtgtgcgggacgaccttgcgagaggttaagctgggacagcgg
gccagcgtgtactgcccgcgctgccagcgctga

DBGET integrated database retrieval system