KEGG   Pseudomonas sp. VLB120: PVLB_22960
Entry
PVLB_22960        CDS       T02897                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
psv  Pseudomonas sp. VLB120
Pathway
psv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:psv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PVLB_22960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psv03021]
    PVLB_22960
   03400 DNA repair and recombination proteins [BR:psv03400]
    PVLB_22960
Enzymes [BR:psv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PVLB_22960
Transcription machinery [BR:psv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PVLB_22960
DNA repair and recombination proteins [BR:psv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PVLB_22960
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: AGZ37371
UniProt: A0AA86AHI4
Position
complement(5047131..5051330)
AA seq 1399 aa
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVVVRSPINCETRYGICAKCYG
RDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEEGITIKRQTDELTGLTNIEVMDVKDRPAAGKEIRPAIKM
VDASGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSEPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLVENERLASEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq 4200 nt   +upstreamnt  +downstreamnt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgcggtgtcatctgcgagaagtgcggcgttgaagtcgccctggccaaggttcgtcgtgag
cgcatggcccacatcgaactggcttcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccggatcggcctgctgatggacatgaccctgcgtgatatcgagcgtgttctctac
ttcgagagctatgtcgttatcgacccaggcatgaccacccttgaaaaaggccagctgctg
aacgacgagcagtatttcgaagcgctggaagagttcggcgatgacttcgatgcccgcatg
ggtgccgaggctgtccgcgaactgctgcacgctatcgacctggagcacgagatcggccgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagctttccagggttcgggcaacctgcctgagtggatggtcttgacc
gtcctgccagtgctgccgccggacctgcgcccgctggttccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtcggcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaagcggtcgacgccctgctggacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtcgctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacctgctcggtaagcgtgtggactactctggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggctctggagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgaactgccagaggtgtgggacgttctcgccgaagtgattcgcgaacacccc
gtcctgctcaaccgtgcaccgaccctgcaccgtctgggtatccaggccttcgaaccggtt
ctgatcgaaggtaaggctatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgaccctggaagcccagctcgaagcg
cgcgcactgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccgatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagccatcaacgcc
aagggcgaaggtcgcgtgttcgctgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagctgccctgcacgcgaaaatcaaggttcgtatcaacgaaaccgtgaaagagcgtgat
ggctcggtggtcaagaacacccgcatcgtcgacaccactgtcggccgtgcgctgctgttc
caggttgtaccggcaggtctgccgtacgacgtggtcaaccagccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctatcgcgtggttggtctgaaagagaccgtgatcttc
gctgaccaactgatgtacaccggtttcgcctactcgaccatctccggcgtttccatcggt
gttaacgacttcgttatcccggacgagaaagcccgcatcatcggtaccgctaccgacgaa
gtgaaggagatcgagagccagtacgcgtccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgagggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggcagactccggtgcgcgtggttcggccgcccagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggctccatcatcgagacgccgatcacc
gcgaacttccgtgaaggtctgagcgttctgcagtacttcatctcgacccacggtgctcgt
aagggtctggcggatactgcactgaagaccgcgaactccggttacctgactcgtcgtctg
gtagacgttgcccaggatctggttgtgaccgagatcgactgcggcaccgaccagggcctg
ctgatgactccgcacatcgaaggcggcgacgttgtagagccgctgggcgagcgcgtattg
ggtcgtgtgattgcccgtgacgtgttcaagccaggcaccgaggacgtcatcgttccggcc
ggtaccctggtcgacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtc
gtcgttcgttcgccgatcaactgtgaaacccgctacggcatctgtgccaagtgctacggt
cgcgacctggcgcgtggtcacctggtcaacatcggtgaagctgtcggcgttatcgccgct
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacttcggctgccgacagcgtacaggtgaagaacggcggtatggtgcgtctg
cacaacctgaagcaggttgagcgtgccgatggcaacctggtcgcggtatcgcgttccggc
gagctggccattgccgacgagttcggtcgtgagcgtgagcgctacaagctgccttacggt
gctgtgatttcggtcaaggaaggtgacaaggtcgaagctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgtcaccgagctgaaaggtaccgtgaccttcgtaggcatg
gaggaaggcatcaccatcaagcgtcagactgacgaattgaccggcctgaccaacatcgaa
gtcatggacgtcaaggatcgccctgccgcaggcaaggaaatccgtccggccatcaagatg
gtcgacgcctctggcaaggatctgtacctgccaggtaccgacgtacctgctcagtacttc
ctgccggccaacgccttggttggtgtggctgacggcgcccagatcggtgttggtgacgtt
atcgcgcgtatcccgcaagaaacgtccaagacccgtgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgccgtccgaaagaagcctcgattctggcagaagtcagc
ggcaccatcgccttcggtaaagagaccaagggcaagcgtcgtctggtcattaccccgacc
gacggtagcgagccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggtccgagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggcgaagtacatcgtcaacgagattcaggacgtt
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgagatctccgagtcgggcgattccagcttcatcaagggcgaccagatg
gaactgacccaggtactggtcgagaacgagcgtctcgccagcgaggacaagttcatctcg
aagttcacccgcgtgctgctgggtatcaccaaggcgtcgctctcgaccgagtcgttcatc
tccgcggcttccttccaggaaactacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggctggt
accggtctggcgtaccacagcgagcgtaagcgtcgccgtgatgccgacaagccgctgcgt
gtaagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggtaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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