KEGG   Pseudomonas cremoricolorata: LK03_05275
Entry
LK03_05275        CDS       T03354                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
psw  Pseudomonas cremoricolorata
Pathway
psw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LK03_05275 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psw03021]
    LK03_05275 (rho)
   03019 Messenger RNA biogenesis [BR:psw03019]
    LK03_05275 (rho)
Transcription machinery [BR:psw03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     LK03_05275 (rho)
Messenger RNA biogenesis [BR:psw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     LK03_05275 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 AAA_22 NACHT
Other DBs
NCBI-ProteinID: AIR88707
UniProt: A0A089WQG4
Position
complement(1227278..1228537)
AA seq 419 aa
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNKRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLTDKLKQTKTNDEFFLSMKRK
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaacctgacagaactcaagcaaaagccgattaccgatctgctggaaatggccgagcag
atgggcatcgaaaacatggcccgctcgcgcaagcaggacgtgatcttcgccctgttgaag
aaacacgcgaaaagcggcgaagagatctcgggtgacggcgtgctggagattctccaggat
ggattcggtttcctgcgttcggcagatgcttcgtatctggccggccctgacgacatctat
gtctcgcccagccagatccgccgcttcaacctgcgcaccggcgacaccatcgtcggcaag
atccgcccgccgaaggaaggggagcgctacttcgcgctgctgaaggtcgataccatcaac
ttcgaccgtccggaaaacgccaagaacaagatcctgttcgaaaacctcacgccgctgttc
cccaacaagcgcctgaagatggaagccggcaacggttccaccgaagacctgaccggccgc
gtcatcgacctgtgcgccccgatcggcaaaggccagcgcggcctgatcgtcgcgccgccg
aaggcgggcaagaccatcatgctgcagaacatcgcggccaacattacccgcaacaacccc
gagtgccacctgatcgtcctgctgatcgacgagcgcccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctcgaccttcgatgagccaccgacccgtcacgta
caggttgccgaaatggtcatcgagaaggccaagcgcctggttgagcacaagaaggacgtg
gtcattctgctcgactccatcactcgtctggcccgcgcctacaacaccgtgatcccgagc
tcgggcaaggtgctcaccggtggtgtagacgcccacgcgcttgagaaacccaagcgcttc
ttcggtgcggcgcgcaacatcgaggaaggcggttcgctgaccatcatcgccaccgcgctg
gtggaaaccggctcgaagatggatgaagtcatctacgaagagttcaagggtaccggcaac
atggaactgcccctggaccgtcgcatcgctgaaaaacgcgtattcccggccatcaacatc
aaccgctccggcacccgtcgcgaagagttgctgaccgccgacgacgaactgcagcgcatg
tggattctgcgcaagctgctgcacccgatggacgagatcgccgccatcgagttcctcacc
gacaagctcaagcagaccaagaccaacgacgagttcttcctgtcgatgaagcgcaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system