KEGG   Paraburkholderia terrae: C2L65_36455
Entry
C2L65_36455       CDS       T05318                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pter  Paraburkholderia terrae
Pathway
pter03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pter00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C2L65_36455 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pter03400]
    C2L65_36455 (ligD)
Enzymes [BR:pter01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C2L65_36455 (ligD)
DNA repair and recombination proteins [BR:pter03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C2L65_36455 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AUT66149
UniProt: A0A2I8F336
Position
3:1501390..1503900
AA seq 836 aa
MASSRNAISPPLSRYHKKRDFLVTPEPPASSAIASDKAGKPGFVVQKHWASRLHYDFRLE
LNGILLSWAVPKGPCYDPKEKRMAIHVEDHPVDYASFEGTIPKPQYGAGTVIVWDHGTWE
PIGDPVKGMEAGKLVFRLHGEKLAGLWELVRISKADDRQDQWMFFKKRDEWSRPLVEYDV
IKALPDSVIANPLGMVEDREARSARPAGDAEPEVDLSAAARASMPAKLEPQLATLATSLP
TSGDWIIESKLDGYRLLARIDKGRVRLLTRGGHDWTTKFPALETELSDLPLSSGWLDGEI
TILKDGLPNFSALQTAIDGRANQDIVYFLFDLMYLDGEDLRNVPLWSRRARLAQLLEDAG
EQLRFSPNFEAPPAQVFEAAARLGLEGLMLKRRDAPYESGRTRTWLKAKARLRQELIVCG
FTGRGGKSGEVGSLLLGYYVGDKLHDAGSVGTGWDSRTAQDLWRRLIPLKTDATPFDVEA
AKARRWSRRAAGSEWWVQPTLVAEVEFAEWTTDGVVRQASFKGLRLDKPAGSVVREGGKT
QAPEFLPELKITHPERIVDSSVGVTKADLVRYYASVAGWMLPHLKDRPVAMVRAPSGIAG
ELFFQKHAERTAMPGLRAHDRELWPKHPPLLTVDTVDALLSAAQMNVVEFHTWNSTASKL
DNPDRVIFDLDPGEGVKWSSVLEAAILVRALLSELGLKAWLKTSGGKGLHVVVPLNARLD
YGKVKVFSQTFVRHLATTIPERFSAISGSSNRVGKVYVDYLRNGMGQTTAAAFSARARPG
MGVSMPVSWEQLTELKSGAQWNVQTAREYLSFQSRDPWSDYWSSAQSLASAIKRLR
NT seq 2511 nt   +upstreamnt  +downstreamnt
atggcctcttcccgcaacgcaatatccccacctctgtctcgctaccacaaaaagcgggac
ttccttgtcacgcctgagccgcctgcgtcaagcgcgatcgcatccgacaaggctggaaaa
ccaggattcgtcgtgcaaaagcattgggcaagcaggctgcattatgacttccgcctggaa
ctcaatggtatcttgctgtcgtgggccgtaccgaaagggccttgttacgatccgaaagaa
aagcgcatggccatacacgtcgaagaccatcctgtcgactatgcaagctttgaaggcacc
attcccaaaccacaatacggcgctggcacagtcatcgtctgggaccacggcacctgggag
ccaatcggtgacccggtcaaaggaatggaggctggcaagctagtcttccggcttcacggt
gagaaactcgcagggctttgggaactggtgcgcatatcgaaggcggatgacaggcaagac
cagtggatgtttttcaaaaaacgtgatgaatggtcccgtccgcttgtggagtacgacgtc
atcaaggcgctccctgatagtgtcatcgcaaatccgcttgggatggttgaagatcgcgag
gcaaggtctgccagacctgcaggtgacgccgaaccggaagtcgacctgtccgcagcagcg
cgcgcatcgatgccggcaaagctcgagccgcagcttgcgaccttggcaacctcgctgccg
acgagcggcgactggattattgaaagcaaactagatggttaccgcctgctcgctcgcatt
gacaagggtcgcgtacggctcttgacgcgaggcgggcacgactggacaacaaaatttccg
gcgctcgagacggagctgagtgacctgccactctcaagcgggtggctggacggcgaaatc
accatactgaaagacggcttgccgaacttttccgcgcttcagactgcgattgatgggcga
gccaaccaggacatcgtctatttcctgttcgacctgatgtacctcgatggggaggacctg
aggaacgtgccgctgtggtcgaggcgcgcgcggctggcgcaactgcttgaagatgcaggc
gagcagctacggtttagtccgaacttcgaggcaccaccagcgcaagtgttcgaagcggcc
gccagactaggtcttgaagggctgatgctgaaacggcgcgacgcgccgtacgagtctgga
aggacgcggacgtggttgaaagcgaaagcgcgattgcgtcaggagctaatcgtctgcgga
ttcaccgggcgcggcgggaagtccggggaagtcggcagcctgctgctgggctattacgtt
ggagacaaacttcatgacgccggaagcgtcggtaccggctgggactcacgaaccgcacaa
gatctctggcgccgcctgattccgttaaagacggatgccacgccattcgatgtggaagcc
gcaaaggcgcgccggtggtcaagacgcgcagccgggagcgaatggtgggttcaaccgaca
ttggtcgccgaggtcgagttcgccgaatggacgacggacggcgtcgtccggcaagcgtcg
ttcaagggactgcgcctcgacaaacctgcgggcagcgtcgtccgcgagggaggcaagacg
caggcgcccgagtttctgcccgaactgaaaatcactcatcccgagcgaatcgttgactct
tcggtcggcgtcacgaaggcagacctcgtccgctactatgcgagcgtcgcgggatggatg
cttccccacctgaaagacaggccggtagcgatggtccgtgctccgtcaggcatcgccggc
gaactcttctttcaaaagcatgcggagcgaaccgctatgcccggtctgagagcgcacgac
cgcgagctgtggccaaagcatccgccattgctgaccgtagacaccgtggacgcgttgctg
tcggcggcgcaaatgaacgttgttgagtttcacacgtggaactcgactgccagcaaactc
gacaaccctgaccgtgtcatcttcgacctcgatcccggtgagggagtgaaatggagcagc
gttctggaggctgcaatccttgtgcgggcgttgctctcggaactggggctcaaggcttgg
ctcaagaccagcggcggcaagggactgcacgtcgtggtgccgcttaacgcccggttggac
tatgggaaagtgaaagtgttttcgcagaccttcgtccggcacctcgcgacaacaattccc
gaacgtttttcggccatttccggttcctcgaaccgggttggcaaagtctacgtggactac
ttgcgtaacgggatgggccagactaccgccgcagcgttctcagctcgcgccagaccaggg
atgggtgtatcgatgcccgtctcgtgggagcagctcaccgaactcaagagcggtgcacaa
tggaatgttcagacggcacgcgagtatctcagcttccagtcgcgggatccctggtcagac
tattggtcgagcgcccaatcgctggcttccgcgataaaacgcctaaggtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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