KEGG   Phaeodactylum tricornutum: PHATRDRAFT_16357
Entry
PHATRDRAFT_16357  CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03013  Nucleocytoplasmic transport
pti03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    PHATRDRAFT_16357
   03015 mRNA surveillance pathway
    PHATRDRAFT_16357
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATRDRAFT_16357
Enzymes [BR:pti01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     PHATRDRAFT_16357
    5.6.2.5  RNA 5'-3' helicase
     PHATRDRAFT_16357
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     PHATRDRAFT_16357
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     PHATRDRAFT_16357
SSDB
Motif
Pfam: AAA_12 AAA_11 Viral_helicase1 UvrD_C_2
Other DBs
NCBI-GeneID: 7198513
NCBI-ProteinID: XP_002184749
JGI: 16357
UniProt: B7GC68
Position
25:complement(180415..181218)
AA seq 268 aa
AQVICCTCIGSGGDILDAMTFDRVLLDEATQATEPAVLVPLMRGCRQLVLVGDHCQLPPT
VLSTRAEEEGHGVPLFSRMVACGVPPYMLDTQYRMHPCIAMFPSDLFYGGLLRNGVSAPE
RRPLAGFPWPREEFPVAFLPIQGVEMDDGVSKYNDAEAAAACNAVSLLLQGGQCSASDIA
VVTPYAAQARLIRRMIRRILPDSGPPFIEVASVDGFQGREKEAVVFSAVRSNDYGSIGFT
SDWRRVNVSFTRARRALIVIGNEHTLRR
NT seq 804 nt   +upstreamnt  +downstreamnt
gcgcaagttatttgttgcacttgtattggatccggtggcgatattctggacgccatgacg
tttgatcgggtgcttttggacgaagccacgcaagcgaccgagcctgcggtactggtgccg
cttatgcgtggctgccgtcagttggtcctggtgggagatcactgccaattaccaccgacg
gttctcagtacacgggccgaggaggaaggtcacggtgttcctttattttcccggatggta
gcctgtggtgttccgccttatatgttggatacgcaatatcgtatgcatccgtgtattgcc
atgttcccgtcggatctcttctacggaggtcttttgcggaacggtgtctcagcaccggaa
cgtcggccgctggcgggtttcccctggcctcgtgaagaatttcccgtcgcgttcttgcca
attcagggagtcgaaatggacgacggcgtcagtaaatataacgatgcggaagcggctgcg
gcttgcaacgccgtatcgttacttttgcagggtggtcagtgcagtgcatcggatattgct
gtcgttactccatacgcggcacaggcgcggttaattcggcgtatgatccggcgaatctta
cccgatagcggacccccctttattgaagtcgcttcggttgacggtttccaaggtcgagaa
aaagaagcggtagtcttctctgcggttcgtagtaacgattatggcagtattggtttcaca
tctgattggaggcgtgtaaacgtttccttcacccgtgcccgtcgtgctttgattgtgatt
ggaaacgagcatacgttgcgccgc

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (284)   
   KEGG ORTHOLOGY (1)   
   RefGene (279)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (299)   

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