KEGG   Phaeodactylum tricornutum: PHATRDRAFT_20574
Entry
PHATRDRAFT_20574  CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03022  Basal transcription factors
pti03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PHATRDRAFT_20574
  09124 Replication and repair
   03420 Nucleotide excision repair
    PHATRDRAFT_20574
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pti03021]
    PHATRDRAFT_20574
   03400 DNA repair and recombination proteins [BR:pti03400]
    PHATRDRAFT_20574
Enzymes [BR:pti01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PHATRDRAFT_20574
Transcription machinery [BR:pti03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PHATRDRAFT_20574
DNA repair and recombination proteins [BR:pti03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PHATRDRAFT_20574
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C SNF2-rel_dom DEAD SWI2_SNF2
Other DBs
NCBI-GeneID: 7201274
NCBI-ProteinID: XP_002180464
JGI: 20574
UniProt: B7G0F2
Position
9:571859..574141
AA seq 720 aa
MSRPCWTCPDGNIYLEAFHDLYVSAYDFLVAIAEPVARPEFLHQYKLTPYSLYAAVATNI
ETNAIVSVLERLSKNKLPSQVIKFIRECTQKYGKAKLVLKHNRFYVESEFPAVLRELLRD
PTIAQARIVEDVVDASALDADGFVTQSKAQEMKENLHMLREPDDDSEEDEEGLSTGAGGQ
PTKPSNVVVSFQIKPESVEVVKRQAIELDYPLMEEYDFRNDTMNPNVPRMDLKPHTRIRR
YQERSLAKMFGNGRARSGIIVLPCGAGKTLTGVTAAQTIKKSVVCLCTNAVSVLQWKYQF
QLWTSIPDEHIAVFTSDHKDKLVDPCVLVTTYTMISYSGKRSAQSQEIMDQITSREWGLL
LMDEVHVVPAKMFRRVVGSVKAHCRLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTA
QGYLANVQCVEVWCPMTGPFMKEYLMASNSRLKQLLYVMNPSKLRAVDFLVRFHEARGDK
IIVFSDLVYSLKLYAEMLKKPLIYGETPERERQAILGTFRASDAVRTICISKVGDTSIDL
PEANVIIQVSSHFGSRRQEAQRLGRILRPKSYTQQDGSNRSTFNAFFYTLVSSDTQEMFY
SAKRQQYLIDQGYTFKIVTNLCEKADAEAIANGCTFATPEDDRKLLRTVLTSETDLEKEQ
RAEDTAIRKNNTDGAALADAASKKTTSMAQLSGGTGLRYKEFSSSGLPKRHPLFRKRQRL
NT seq 2163 nt   +upstreamnt  +downstreamnt
atgtcgcggccctgctggacttgtccagacggcaatatttatctcgaggcctttcacgat
ttatacgtcagtgcgtacgattttctcgtcgccattgccgaaccagtggcgcgccccgaa
tttttgcaccaatacaagttaacaccgtacagcttgtacgccgctgtcgctaccaacatt
gaaaccaacgcaattgtgtccgttcttgaacgcctgtcgaaaaacaagctcccatcccag
gtcatcaagtttattcgggagtgtacacagaagtacggcaaggccaaattggtccttaag
cacaatcgtttttatgtcgaatcggagtttccggccgttttacgcgaactgctacgcgat
cctacgatcgcgcaagcacgcattgtggaagatgtggtggatgcatctgccttggatgcg
gacggatttgtcacgcaatcaaaggcacaggaaatgaaagagaatctccatatgttgagg
gaaccagacgacgatagtgaagaagacgaagaaggactgtcaaccggggcaggcggccaa
cctaccaaacccagcaatgtcgtcgtcagttttcaaattaaacccgaatctgttgaagtt
gtgaaacgccaagccattgaactagattatccattaatggaagagtacgatttccgcaac
gacactatgaatccgaacgtaccccgcatggatttaaagcctcacacgcgtattcgtcgc
taccaggaaaggtccctggctaaaatgttcggcaatgggcgagctcgatccggaatcatc
gttttgccgtgtggtgccgggaagaccttgacgggcgtaacagcggcgcaaacgattaaa
aagtcagtcgtgtgtctttgtaccaacgcggtgtcagtgctgcagtggaaataccaattt
caattgtggacttccattccggacgaacatattgctgtctttacttctgatcacaaagac
aaacttgttgacccatgcgtactcgtaacgacatatacgatgatcagctactccggtaag
cgttcagcgcaatcgcaagaaattatggaccaaatcacgtcgcgtgaatggggtttgttg
ctaatggacgaagtccacgtcgtaccggccaaaatgtttcgtcgcgttgtgggatctgtc
aaagcgcattgtcgattgggactcacagccacattggtccgcgaagacgacttgatttcc
gatctcaactttctgattggtccgaaactatatgaggcaaattggatggatctgactgct
caaggatatctggcgaacgttcagtgtgtggaagtgtggtgtcccatgacaggcccgttt
atgaaagagtacctgatggcttcaaactcacgtttgaagcaattgctatacgtgatgaat
ccgagcaagttacgggcagtcgactttttagtccgatttcacgaagctcgaggcgacaag
attatcgtcttttccgatttggtgtacagtctgaagttgtacgcagaaatgctaaaaaag
ccgttgatatatggcgaaacgccggagcgtgagcgacaggctattctagggaccttccga
gcgtccgatgcagtccggactatttgtatatccaaagttggtgatactagtattgatcta
cctgaggccaatgtgattatccaagtgtcgtctcactttggttctaggcgacaagaagct
cagcgtctcggacgcattttgcgtcccaagtcgtatacacaacaggacggcagcaatagg
tccaccttcaacgcattcttctacaccctggttagcagcgatacccaggaaatgttttat
tcagccaaacgacaacagtatttgattgatcagggatatacattcaagattgtcacaaac
ctatgtgagaaggctgacgccgaggccattgcaaacggttgcacttttgcgacgccagaa
gacgatcgtaaattgttacgaacggttttgacgagcgagacggatttagagaaagaacag
cgcgctgaagacaccgcaattcggaagaataacactgacggtgctgccttggctgatgcg
gcttctaaaaagacgacgagtatggcccagcttagtggtgggactggactgcgttacaaa
gagttttcttcgtcagggctaccgaagcggcatccgttgttccggaagagacaacgtctc
tag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (179)   
   KEGG ORTHOLOGY (1)   
   RefGene (174)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (197)   

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