KEGG T01075: PHATRDRAFT

Phaeodactylum tricornutum: PHATRDRAFT_54801

Entry

PHATRDRAFT_54801 CDS T01075

Gene name

CHC

Definition

hypothetical protein

Orthology

K04646

clathrin heavy chain

Organism

pti Phaeodactylum tricornutum

Pathway

pti04144

Endocytosis

Class

Cellular Processes; Transport and catabolism; Endocytosis [PATH:pti04144]

SSDB

Motif

Pfam:

Clathrin Clathrin_H_link Clathrin_propel Clathrin-link Apc3

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

AA seq 1702 aa
MAATPITFTEALNLQQLGVPEAAIKHGKTTMESDRFIVAVEEAQVTMIDLRNNAAVERKA
MKAEAAIMNPGEQRILALRSGVNVQIFNLDTRQKLKSHQLTEPCVYWKWTSNSNLAMVTA
SAVYHWSLEGDSAPQQVFDRHPSLQNAQIINYRVSQDGKWCVLGGIAPGANGVVNGSMQL
YNFEKKLSQPLQGHAAAFAVLKIPGRDDPAQVIVFHEKKHDSPEPPKLYVREVGRTAGPP
YGVQPVQIPVPQDGANDFPVSLAIVEKDSLAYMMTRMGYVYVFDAMSAKTVFRNRVTQET
VFLSVAQESTGAVFGITVRRGQVFRLQVNNQALIPYVLNTLNDEDLALKLAGRLNLPGAE
NLQARAFERLLQQGNVAEAARIVAGSGSALRTPATIARFQQIPAQPNQVPPLLQYFSILL
ETGTLNEQESIEVAKPVLQQQRIPLMEKWLKENKLTSSESLGDLIMPHDTGMALSVYLRA
ECHGKAIQCFVQRGEYDKIVSYASSVGFQMDYTQMLNQLLFSNPAGALDLAKGLATAEAF
LSSNRLQETTAFLLEALKENKPEHAFLQTKLLEINLLSGAPQVADAIMQQGMLTHYDRPH
VGKLCERAQMWQRAAEHYTEIADIKRVFKNSHQMSPEFVVEYFGKLNREQSIMLLKDMMG
RGPQNMQVCVEVAKKYHEELGSEQLVQVFESNRATEGLYYYLGAIVNSSEDPFVHFKYIQ
ASCMLGQFKEAERVCRDSTVYIAEEVKEYLKGAKLPDPRPLIHVCDRHGFVDELTEYLYL
NSLLQYIEVYVTKVSPTKTPMVVGKLFDLGANEDFIKRLLMAVGTACPVDELVEIAETRN
RLRLLQPWLEARVATGSTEPGTHDALGKIYITLNRDPKAYLLNNMFYNPKVLGPYCEALD
PQLAFIAYKRGAGECDDELIKVSHDHGLYRDLAQYLVERQDLVLWGKVLNKEEGKEDEED
PQRRQLIDQVVEWALPESTNADEVSCTVKAFMAADLPSELINLLERIVLQGSDFSDNKNL
QNLLILTAIRADASRVAGYVDQLDNFDAKDIALICVSESHMLYEEGFSIYTKFSKPEFTQ
DKDEQVEMQVLAIGVVVDNMKDLDRAKTYATQCDEKPVWSKLGKAQLEGKFAADAIESFI
NADDPSEYVMVCAEANEAEIWMELIPYLKMARKTMQENLVDTELIYSYAKTNNLTELEQF
VTGPNVSNIQSIGDRCFNEGLYQAAKILFISINNNSKLALCHIHLEEYREAVEAAKKANN
VSTWKAVCFACLRADEFRLAATCGLEVIKYPDHLDEVVTHYSDLGHFDHLISLFEQGIGL
EDAHIGIFTELGILYTKHIPEKVMDHCKVFFTKLNVSKVVRACERARMYKPAVYLYMQDK
QHDNAIKTMIERAPAWENDLFLDAVTKIRNAELTYKAIAYYLSMHPNLFTRLMEVMEDTA
DHSRVVSQLRRTGDWALQLGQPYMKSVQKGNLSQVNEALNELYVDDEDYESLRKSIDSFN
NFNMIALASKLSTHELLEFRRISAYVYRRNKKWSQSIELSKNDRMWKDCIDTANESEDAE
IIEGLLRFFCETSEKECFCACLYTCFSHISPDVVLELGWVNGYHHFIMPFLIQNLRQTYS
RLKKLEERTAPPKEDANAQDGIAATYGNLSGFGGGMLMLENGGGMGSPMGGPGIDMSGFG
TAQQPQMGGMPNGSMPGAVPYM

NT seq 5109 nt +upstreamnt +downstreamnt
atggcggcaactcctattacctttacggaggccttgaacctgcaacaactcggagttccc
gaggcagcgatcaagcatggaaaaacaaccatggaaagtgatcgtttcattgtggccgta
gaagaagcccaggtcaccatgattgacttgcgcaacaacgccgcggtggagcgcaaggcc
atgaaggcggaagccgcgattatgaacccgggagaacaacggatcttggcgctgcgctcg
ggagtcaacgttcaaatctttaacctcgacacccgacaaaagctcaagtcccaccagctc
accgagccttgtgtctactggaaatggacgtccaactccaacttggccatggtgacggct
tccgcggtctaccattggtccctcgagggagatagtgctccccagcaagtctttgatcgt
catccgtccctccaaaacgcacaaatcatcaattaccgagtctcacaggacggcaaatgg
tgtgtgcttggaggtattgctcccggtgccaacggcgtcgtgaacggtagtatgcagctc
tacaactttgaaaaaaaactctcgcagccacttcagggtcacgctgcggcctttgccgtc
ctcaagattcccggtcgcgacgatcccgcccaagtcattgtctttcacgaaaagaagcac
gacagtccggagccacccaagctgtacgtccgcgaagtcggacgcacggcggggccgccc
tacggagtccaacccgtccagattccggtccctcaagacggagccaacgactttcccgtc
agtctcgccattgtggagaaagattcgttggcctacatgatgacccgcatgggatatgtt
tacgtctttgacgccatgtctgccaagacggtcttccgcaaccgcgttacccaagaaacg
gtctttttgtcggtcgcacaggaatccaccggggccgtctttggcatcaccgtccggcgg
ggacaagtattccggttgcaggtcaacaaccaagcattaatcccctacgtcttgaacacg
ctcaacgatgaagatcttgccctcaagttggccggacggttgaacctgcccggtgccgag
aacttgcaggcccgtgcatttgagcgtttactgcagcaaggcaacgttgcggaagccgcc
cgtattgtggcaggctcgggttcggcgttgcgcacgcccgcaaccattgctcgctttcag
caaatccccgctcagcccaaccaggtcccacctctccttcaatacttttccatcctgctg
gagacgggcaccttgaacgaacaagagtcgattgaagtcgctaagccagttttgcagcag
caacgaatcccgctgatggagaagtggctcaaggaaaacaagctcacttcctcggaatcg
ctaggtgatttgatcatgccgcacgataccggcatggccttgtcggtgtacctgcgtgcg
gaatgtcacggcaaggccattcaatgctttgtgcagcgtggtgaatacgacaagattgtt
tcgtacgctagttcggttggcttccaaatggactacacgcaaatgttgaaccagctgctt
ttctccaatcccgcgggggcgctggatctcgccaagggactggctactgcggaagccttc
ttgagcagcaatcgtcttcaggagacgacggcctttttgctcgaagctctgaaagaaaac
aagcccgagcatgctttcttgcagactaagttgcttgagatcaacttgctcagtggtgct
ccgcaggttgcggacgccattatgcagcagggaatgttgacccactacgatcgcccgcac
gtgggtaagttgtgtgaacgggctcagatgtggcagcgtgccgccgagcactacaccgag
attgccgatatcaaacgtgtgtttaagaactcgcaccaaatgagccccgagtttgtggtc
gagtattttggtaagctcaaccgtgagcagtcgatcatgttgctcaaggatatgatgggc
cgcggcccgcagaacatgcaagtctgcgttgaagttgcgaagaagtatcacgaagagctg
ggatcggagcaattggtccaggtgtttgaatccaaccgcgcgacggaaggtctctactat
taccttggtgccattgtcaatagttcggaggacccctttgttcatttcaagtacatccag
gcttcgtgtatgctcggccaattcaaggaagccgaacgcgtctgtcgcgattctaccgta
tacattgcggaagaggtgaaggaatacctcaagggagctaagcttcccgatcctcgtccg
cttattcacgtgtgtgaccgccacggattcgtggacgaattgacggaatacctctacttg
aactcacttttgcaatacattgaagtatacgttaccaaggtgtctccgacgaagactcca
atggtggtcggaaaacttttcgacttgggtgctaacgaggactttatcaagcgtttattg
atggccgtcggaactgcctgtccggtggacgagctagtggaaattgccgaaacccgcaat
cgcctgcgtttgttgcagccttggctcgaggcgcgtgttgccactggaagcaccgaaccg
ggaacgcacgacgcgcttggaaagatctacattacgctcaaccgcgaccccaaggcgtat
ctgctcaacaacatgttctacaatcccaaggtcctgggaccgtactgcgaagcgttggat
ccgcagttggctttcatcgcctacaagcgtggtgccggtgagtgcgacgacgagctcatc
aaagtcagtcacgaccatgggctgtaccgggatttggcgcagtacttggttgagcgacag
gacttggtgctgtggggcaaggtgctcaacaaggaagaaggcaaagaagatgaggaagat
cctcagcgacgtcaacttatcgatcaagtcgttgaatgggctcttccagaaagcaccaat
gctgacgaagtttcctgcacagtcaaggccttcatggcagccgacttgcctagcgagctc
atcaacctgttggagcggattgtcctacagggttcggacttttccgacaacaagaacttg
cagaatttacttatccttacggccattcgtgctgatgccagccgcgtcgcggggtacgtt
gatcagctcgacaactttgacgcgaaggatattgctcttatttgtgtgtcggagagtcac
atgctctacgaagaaggtttcagtatctacaccaagttttcgaagcccgaattcacgcag
gacaaagatgaacaggtagaaatgcaggtgctagcgattggcgttgtcgttgacaacatg
aaagacttagaccgtgccaagacgtacgctacgcagtgtgacgaaaagcctgtctggtcg
aagctcggtaaggcccagctagaagggaagtttgccgcggatgctattgaatccttcatc
aatgctgatgacccgagcgaatatgtcatggtttgcgctgaagccaacgaggccgagatc
tggatggaactcattccttacctcaaaatggctcgcaaaactatgcaagagaacttggtt
gatactgagttgatttactcgtacgccaagacgaacaatctcacagagcttgagcaattt
gtcactggaccgaatgtttcgaacattcaatccatcggagatcgttgtttcaacgaaggt
ttgtaccaggcagcgaagattttgtttatcagtatcaacaacaactcgaagttggccctg
tgtcatatccatttggaagagtaccgggaagccgttgaagctgccaaaaaggccaacaat
gtatcaacatggaaggctgtatgctttgcctgtttgagagctgatgagttccgactggct
gctacatgtggtctcgaagttattaagtatcccgaccacttagacgaggttgtcacccac
tactccgatctcggtcacttcgatcatttgatttctttgtttgagcaaggaattggtttg
gaagatgctcacattggcatcttcaccgaacttggcattttgtacacgaagcatattccg
gagaaggtcatggatcattgcaaggtcttctttaccaaactcaacgtatcgaaggtagtc
cgcgcttgtgagcgagcccgtatgtacaagcctgctgtgtatctgtacatgcaagataag
cagcacgataacgctatcaagaccatgattgaacgtgcccctgcgtgggaaaacgatctc
tttttggatgcggtcaccaagatccgcaatgccgaactcacgtacaaggctatcgcctat
tacttgtcgatgcatcctaatctctttacccgactgatggaagttatggaggataccgcc
gatcactctcgtgtagtgagtcagttgcgacgcacaggcgattgggctttacagcttggt
caaccgtacatgaaatctgttcagaagggtaacctgagccaggtgaacgaggccctgaat
gagctctacgtggatgatgaggactacgaatcccttcgcaagtcgatcgatagtttcaac
aatttcaacatgattgcactagcgtcaaagctctccactcatgagcttcttgagttccga
cgtatatctgcttacgtttaccgtcgcaataagaagtggagccagtcaattgaactttcg
aagaatgaccgcatgtggaaggactgcatcgataccgccaatgagtcggaagatgctgaa
atcattgaaggtctgctgcgttttttctgcgaaacatccgagaaggagtgtttctgtgca
tgcctgtacacgtgcttttctcatatttcccccgatgtggtgttggaattgggatgggtc
aacggttatcaccactttatcatgcctttcctcattcaaaaccttcgccagacgtacagt
cgtctcaagaagttggaagagcgaactgctccaccgaaggaagacgcgaatgcgcaggat
ggcattgcagcgacttacggaaacctgagtggatttggaggtggcatgctcatgttggag
aatggtggtggaatgggatctccgatgggcggaccaggaatcgatatgagtggattcggt
acggcgcaacagccacagatgggtgggatgcccaacggaagtatgcctggcgctgtgccc
tacatgtag

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (1)   
   JGI-PTI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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