KEGG   Phaeodactylum tricornutum: PHATR_21083
Entry
PHATR_21083       CDS       T01075                                 
Symbol
hCdc48
Name
(RefSeq) hypothetical protein
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
pti  Phaeodactylum tricornutum
Pathway
pti04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    PHATR_21083 (hCdc48)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATR_21083 (hCdc48)
   03009 Ribosome biogenesis [BR:pti03009]
    PHATR_21083 (hCdc48)
   04131 Membrane trafficking [BR:pti04131]
    PHATR_21083 (hCdc48)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pti04147]
    PHATR_21083 (hCdc48)
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     PHATR_21083 (hCdc48)
Ribosome biogenesis [BR:pti03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    PHATR_21083 (hCdc48)
Membrane trafficking [BR:pti04131]
 SNARE
  SNARE associated proteins
   Others
    PHATR_21083 (hCdc48)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    PHATR_21083 (hCdc48)
Exosome [BR:pti04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   PHATR_21083 (hCdc48)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N CDC48_2 AAA_16 AAA_2 AAA_5 AAA_33 AAA_14 AAA_22 TIP49 RNA_helicase AAA_17 nSTAND3 AAA_18 Mg_chelatase AAA_28 AAA_7 ATPase_2 Parvo_NS1 ABC_tran IstB_IS21 Vps4_C ResIII NB-ARC Zeta_toxin Viral_helicase1 Bac_DnaA AAA_24 DUF815 Sigma54_activ_2 Rad17 KAP_NTPase UFD1 Zot Molydop_binding
Other DBs
NCBI-GeneID: 7204652
NCBI-ProteinID: XP_002185883
JGI: 21083
UniProt: B5Y3R0
Position
11:complement(415174..418152)
AA seq 806 aa
MAKDEEMADAILSSGSKKRSPNRLIVDDATNDDNSVISLSPAKMEQLELFRGDTVLIKGK
KGRDTVCIVLADETCDDTNVRMNKVVRKNLRVRLADVVTVTSCGDVPYGKRIHILPLDDT
IEGVSGNLFDVYLKPYFLEAYRPVKKGDLFLVRSAMHPVEFKVVETDPAPYCIVAPDTVI
HCEGDPVKREDEEKMDDVGYDDVGGCRKQMAQIREMIELPLRHPTLFKTLGVKPPRGVLL
YGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAIIFI
DEIDSIAPKREKTNGEVERRIVSQMLTLMDGLKQRASVVVIGATNRPNAIDPALRRFGRF
DREIDIGVPDENGRLEVFRIHTRNMKLDEDVEPEAIARETHGFVGADIAALCTEAAMQCI
REKMDLIDIEDEQIDAEILDSMAVSQDHFRHALAQSNPSSLRETVVEVPNISWEDIGGLE
QVKRDLKELVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLMAKAVANECQANFISIK
GPELLTMWFGESEANVRDVFEKARQAAPCVLFFDELDSIAQQRGGSQGDGGGAADRVMNQ
LLTEMDGVGSKKNVFIIGATNRPDIIDTALMRPGRLDQLIYIPMPDFESRLSILRATLRK
SPVSKDVDLNYLASQTDKFTGADLTEICQSACKIAIREEIERDIERQRMKQEAGEDMDDE
DDEVEDLMPEILPKHFEVSVRNARRSVSDRDLAQYASFAQTLQQSRAAVSGSTGGSLATF
AFPDANAAVGVGAAAEDDDDEEDLYS
NT seq 2421 nt   +upstreamnt  +downstreamnt
atggccaaggacgaagaaatggcggacgccatactcagctcgggaagcaagaagcgcagt
cccaaccgcctcatagtcgatgacgccaccaacgacgataattcggtcatctccctctct
cccgcaaagatggaacagctggagctattccgtggagacactgtcctcatcaagggaaag
aaaggtcgagatacggtctgcatcgtgcttgccgacgaaacctgcgacgacacaaacgtg
cgcatgaataaggtggtgcgtaagaatctacgcgtgcgcctcgcggatgttgttaccgtc
acgagctgtggtgacgtgccctacggcaagcgcatccacattctgcccctggacgacaca
atcgaaggcgtttcgggaaacctgttcgatgtctatctcaagccctactttttggaagcc
taccgtcccgtcaaaaagggggatctcttcctggttcgctccgccatgcacccggtagaa
ttcaaggttgtcgaaacggacccggcaccctattgtattgtcgcacccgacaccgtcatc
cattgtgagggtgacccggtcaaacgtgaagacgaagaaaagatggatgacgtgggttat
gacgatgtgggtggttgccgcaagcaaatggcgcagattcgggaaatgatcgagttgccc
ttgcgtcatccgactctcttcaagacactgggtgtgaagccacctcgcggtgtcttgctg
tacggtcctcccggctccggaaagactctcattgctcgggctgttgccaacgaaaccgga
gcttttttctttttgatcaacgggcccgaaatcatgtccaagatggctggtgaatccgaa
tcgaacttgcgcaaggcttttgaggaagcagaaaagaatgctcctgccattatctttatc
gacgagattgactccattgcgcccaagcgtgaaaaaaccaatggcgaagtcgagcgtcgt
atcgtcagtcaaatgctgacgctcatggacggcctcaaacagcgcgccagtgttgttgtc
attggggcaaccaaccgccccaacgccattgacccggccttgcgccgtttcgggcgtttc
gatcgcgaaattgatatcggcgtgccggatgagaatggtcgtctggaagtcttccgcatt
catacgcgaaacatgaaattggacgaagatgtggaaccggaggcgattgcgcgggaaacg
cacggctttgttggggccgatatcgccgcactctgtaccgaagctgccatgcagtgcatt
cgtgaaaagatggatttgatcgatatcgaagatgaacagattgatgcggaaatattggac
agtatggccgtcagtcaggatcattttcgacatgcattggcgcagtcgaatccgtctagt
ttgcgtgagacggtggtcgaagtccctaacatttcttgggaggatattggtggtctcgag
caagtcaagcgcgatctcaaggaacttgttcagtaccctgtcgagcatcccgaaaagttc
gaaaaatttggaatgtcacctagtaaaggtgttctcttttatggtcctcctggttgtggt
aaaactttaatggccaaagctgtcgccaacgagtgtcaggccaatttcatttccatcaag
ggacctgagctgcttaccatgtggtttggagaaagtgaagcaaacgttcgcgatgtgttt
gagaaggcccgtcaagccgctccatgcgtgctcttcttcgacgaactcgactctattgcc
cagcagcgtggagggagtcaaggagacggtggtggtgccgccgatcgcgtcatgaaccag
cttttgaccgagatggacggtgttggttcgaagaagaacgtgttcatcattggagcgact
aatcgtcccgatatcatcgatacggctttgatgcgtcccggacgtttggaccagcttatt
tatattccgatgcccgactttgagtcgcgcttgtcgattcttcgcgcgacgcttcgcaag
agtccagtatcgaaggatgttgacctgaactaccttgcctcgcaaaccgataagttcacc
ggtgccgatcttacggagatttgtcaaagtgcgtgtaaaattgccattcgagaagagatc
gagcgggacattgaacgtcagcgcatgaagcaagaagccggcgaggacatggacgacgaa
gatgacgaggttgaagatctcatgccggagatattgccaaagcactttgaagtctccgtt
cgcaatgcgcgtcgatctgtctcggaccgcgacctggcccagtacgcttcctttgcgcag
accttgcaacaatcacgggcagccgtttcgggatcgaccggtggcagtctcgcaactttt
gcttttccggacgctaacgcggctgttggcgttggagcggcggcggaagacgacgatgat
gaggaagacctctatagttag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (732)   
   KEGG ORTHOLOGY (1)   
   RefGene (727)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (37)   
   Pfam (37)   
All databases (779)   

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