KEGG   Phaeodactylum tricornutum: PHATR_43960
Entry
PHATR_43960       CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03022  Basal transcription factors
pti03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PHATR_43960
  09124 Replication and repair
   03420 Nucleotide excision repair
    PHATR_43960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pti03021]
    PHATR_43960
   03400 DNA repair and recombination proteins [BR:pti03400]
    PHATR_43960
Transcription machinery [BR:pti03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PHATR_43960
DNA repair and recombination proteins [BR:pti03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PHATR_43960
SSDB
Motif
Pfam: BSD PH_TFIIH
Other DBs
NCBI-GeneID: 7204182
NCBI-ProteinID: XP_002186081
JGI: 43960
UniProt: B5Y4W9
Position
3:550443..552476
AA seq 641 aa
MTMREAMDVDSVETSYTPVRYKKQSGSLQLSTSSLTFLGEGSSKVVKWMHIAKHQVSPAS
YPKPLLKIVLSSGTNLTFQLPDRSALDQIRLDVTRRLQFRSSLSSSSPAGGSRKRPLTDL
SQTSTFGDLDPTALAVTRSALLAAHPSLRQQHQQLVQESETLSEEDFWLTHKDLLEEEYA
RISGLAKAGTSSLLQSHLPTAGKVTLGVEEMRQIFILYPAVHKAYEEKVPLELSDEQFWR
KYLESEYFHRDRGRMGTAAQNHSAIETKTAKSKDGVKGLSMEQQDARAAAVGTDDLFSRY
DQKLSQENGENHETSHRRWGRQLAVGQFDLASTFETERGKVLEQANRDNHPPNIADDGRG
TRVIQKYNRHWAMVLHPEDAIAGSDLMQVARKSVRDVLPGDDDAAAGGGFDQETRRLVKY
AEASTEAANHASCLGEDEGAYEPLTLSNVEAYYSGQLRNGHTAENDEEATKRHIVLARMV
SQKVGKLVDSLEKNFDLPESCFPPPSLGRELLSALTRKMAQDSRTEAASLEMVNKLPEDF
RKRLHSHFRRSSELLRHFFGLRRMEAANAGNGQKLSRIVLAMESFYREMESMRRELPQTE
TGEMMRKMCLPIMDQLDWAFKLHREGSGGGVGGGFVAVEEI
NT seq 1926 nt   +upstreamnt  +downstreamnt
atgacgatgagggaggccatggatgtggattcagtcgaaacctcgtatactcccgtccgc
tataagaaacaaagtgggtcgctacagttgtcgacgtccagtttgacgtttctcggcgag
ggctcctcgaaagtagtaaaatggatgcacattgcgaaacatcaagtcagcccggcatcg
tatccgaagcctttactaaaaattgtcttgtcttcgggaaccaatttgacttttcaatta
ccggatcggagcgcgctggatcagattcgcttggacgtgacgcggcgtctccagtttcgg
tcgtctttgtcgtcgtcgtcgcctgcgggcggcagccgcaagcgcccactgaccgacctg
tcgcagacgtccacctttggagatttggatcccaccgcactcgctgtgactcgatccgcg
ctgttggcggcgcatcccagtctacgacaacagcaccagcaactcgtgcaagaatccgaa
actctgtcggaagaagacttttggctcacccacaaggacttgttggaagaagaatacgca
cgaatctcagggctcgctaaagccggcacttccagtttactacaatctcacctgcctacc
gctggcaaggtgacgctgggggtggaagaaatgcggcagatttttattctctatcccgcc
gtccacaaggcgtacgaagaaaaggtacccttggagctatccgacgaacaattctggcgc
aagtatctggaatcggaatactttcatcgggatcgaggacgcatgggaacggctgcgcag
aatcactcggctatcgaaaccaaaactgcgaaaagtaaggatggcgtcaagggactgtct
atggaacaacaagatgcgcgggctgcggcggttggaaccgacgatttatttagtcgatat
gatcaaaagctatcgcaagagaatggagaaaatcacgaaacttctcaccgtcgatggggt
cgccaattggctgttggccagttcgatttggcgtctacatttgaaacggaacgcggtaag
gtcttggaacaagccaaccgggacaatcacccacccaatattgccgacgacggcagaggt
acacgagtcattcaaaagtacaaccgtcactgggccatggtgctgcatccggaggacgcc
atagccggatcagacttgatgcaagtagcacggaaaagcgtgcgggatgtgttacctggt
gacgacgacgcagcagccggaggaggttttgatcaggaaacacgtcgactcgtaaagtac
gcggaagcatcgacggaagcggcgaatcatgcgtcttgtctcggggaagacgaaggcgca
tatgagcctctgacactgtcgaatgtggaggcatactactcgggtcaattgagaaacgga
cacacagcggaaaacgacgaggaggcgacaaagcgacacatagtgttagcacgcatggtg
tctcaaaaggtcggtaagctagttgattcactggaaaagaattttgatttacctgaatca
tgctttccgccaccttcgcttggtcgggaattgttgtcggctttgacgagaaagatggcg
caggattctcggaccgaggctgcttccctcgaaatggtaaacaagctcccggaagacttc
cggaagcgtctccattcgcactttcgtcggtcgtcggaactgctacgacatttttttgga
ctgcggcgcatggaagcggccaatgcagggaacgggcagaaactgtcgcggattgttttg
gctatggaaagcttttaccgcgaaatggagtcaatgcgacgagagcttccccagacggaa
acgggcgagatgatgcgaaaaatgtgcctccccattatggaccaattagattgggcattt
aagttgcatcgtgaaggcagcggtgggggagttggtggcggtttcgtggcggttgaggaa
atttga

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