KEGG   Paramecium tetraurelia: GSPATT00007239001
Entry
GSPATT00007239001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSPATT00007239001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ptm03041]
    GSPATT00007239001
Enzymes [BR:ptm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     GSPATT00007239001
Spliceosome [BR:ptm03041]
 Complex C
  Other components
   Step II factors
    GSPATT00007239001
SSDB
Motif
Pfam: Helicase_C IBR DEAD AAA_19 AAA_22 zf-RING_UBOX zf-C3HC4_2 zf-RING_5 OB_NTP_bind zf-C3HC4 zf-RING_2 HA2_N ABC_tran RRM_1 T2SSE HA2_C AAA_30 AAA_29 KH_1 zf-Nse AAA_16 zf-RING_6
Other DBs
NCBI-GeneID: 5022209
NCBI-ProteinID: XP_001436424
Genoscope: GSPATT00007239001
UniProt: A0CE10
Position
undetermined
AA seq 1905 aa
MNSKVIINQNTLRDVEMVYEKAIRMISCLKEKHKLITRIRLVDSDKAIFQELAKGMAQLI
DNLRKGGDVHLIFQSNLPYFEVQLDLELFIVEPKKMKECLLRKQLRELGLKNIQFKSKEC
REHIIADDFINLEDEFKKDECAELLKERFDTFKVQDEQAIIEILKKYLKKNLIETYNREL
IDIRFYINQDFDIVIEYKINDNQLNLQKKIKRRRWSEIKDAISHFYTYQYLQEITLSMME
QMFYVDEIELMELRQCVQQIVQNCQSSYNENLKYPLSIYKSRFWDILGILPRSLNTHNRF
GQCKIIIIQNQSRLFFLNHQKIIENKLIKNDITLFQTYTQLIADSKQRLDLIKKNVSSSN
TQSLIKQKRELIEKLLILPELEQEIQGLQILEQWKLNQSNQDNEEDFILQMPEETYDQIK
AITDKIAQTKQIYEEYHRVLNKVKNDVINFQGFKTIQQNKIYLTNLYKRVLQEKQRVTQK
LPIYFKKRELIDSIQQSQVILLIGATGSGKSTQLVQYVYEEIELRGKIICVEPRMIAARS
LAKRVAEEMHTKLGGSVAYLNEYDQLDDDNKIIFTQDRIILNILQKDPLLNDYEVVIIDE
AHERNMNTDILLGLLKDIINKRKDLKIIIMSATMDEELFSNYFQCKAFKVEGKLFDVKIK
YQNSYSDNYIDQIQSLIQNKIIYKVMNQSYQQRHVLIFLAGIDEIQRLLYLFQDYQDMDE
FLFLGLHGQMTQDEQFDVFQETKKIKIIFSTRVAETALTINDVSVVIDIGVDRFSEYDQK
RGMQITKISWISQAQANQRAGRAGRTRQGKCYRLYSEQEYQTQMQEHKTPEIQRCCLDLV
VLRIKSFNKDPFEFEFIQSPNRQAMKSSQEYLIDIKALDEQGNITVLGKFMSQIQTEPRM
SRILIEAYYKNVFRETLSIICVMLNNQSLYLKNTDVSNKIECLNEMGDFFTYSRVYWDFK
SLTNSNLSNFQIKQKCFQKGYHYKTLKNCEKAFDEMEKAFSYFDLQLYENQEIKNKILWN
SDSTREECVMTCFLTAFYPDLCVYNGNPYIGYTFLKSKRNVRIYGSSTLSLLNHFPKYII
CSDLYSSNYFDFCRVAQEVKLEKLKEILKPSQIEEIENFVPDKYQYQQLRNVSSSLLNHL
IHTFNQYSYDEQEKRFQYYCNNDQDNGIFEIWSLKPIDLEFYQKDYYEKMKSYLYFRLYG
QGMLVYFKHGAQIHVTQQCTSSELVIVQFSSSPFNIEEIQQILDEQHLYYNNLFQINANR
FGYCGQIFTNSQEIAYQITYVLNEKAKYRLELQNQQEQQERQRLFTIKPREIRNRVIKSS
VELIFYGSENKGFGFIQFKNQEEAEEFFIKTISIVQFKGRPQDLKIYQDQKSKIRISNVP
YNANEYELLRYLQDLAQQKNCPKPQSLNLIGKEQTETKDWNHEIHKVFEKYTGEKPLHLD
IRSDKNNYRIIVRVMTTTNPIKLEEMRKQINFTNNILGFSSITMKIEYKIIKIISKNILV
QNEEKINDIKKELQAKYSEDLLKIFSSGENMIIIGKNPNFVRQASLMLHGVLNGYNLKVN
LRKYVFKQVLRDNQFYQDLLSLQDLHGFKFNTKLLQQGAIKVYLNQDSLIEIQNAINSMI
KQHVSNNLIVNIRNYSFKPLLTIKDNIMFMLQQKYNVSIDFILQKKQIIIYGNNEQAQKC
KDHLLKSLSKSPEAQKQDLCEICYGELTEKYVLALCNHFFCKNCLYESIKAQNNPPYKCP
QQSCDNLISLSDLQQILCEIEFSKLLDQSFKRYKDQHADEYIGCLTPDCEEFFKKLTQNK
EQFYYCQSCLQSFCFLCKRNAHPQISCEEAKKLFIDGKDLDESELLKMNIKRCPKCQMGV
QKNEGCLHLHCTNCENHFCWVCLHQANLSQDIYAHLRSQHGGYFQ
NT seq 5718 nt   +upstreamnt  +downstreamnt
atgaattctaaagtgattattaatcaaaacacattaagagatgttgaaatggtatatgag
aaggctatcagaatgatttcctgtttgaaagaaaaacacaaattaataacaaggattaga
cttgttgatagtgataaagctatatttcaggaattagccaaaggaatggcataattgatc
gataatttaaggaaaggtggtgatgtacatttgatatttcaatcaaatctaccttacttt
gaagttcaattagatttagaactattcattgtagaaccgaagaagatgaaagaatgtttg
ttgaggaaatagttacgtgagttgggattaaaaaatatttaatttaaatctaaagagtgt
agagaacatataattgccgatgattttataaatctggaggatgagttcaaaaaagatgaa
tgcgctgagttgttgaaagagaggttcgatactttcaaggtttaagatgaataagccatc
atagaaatattaaagaaatatttaaaaaagaatctcatagagacatataatagggaatta
atcgatatcagattctacatcaatcaggatttcgacatagttattgaatataagattaat
gataactaattgaatctctagaaaaaaataaagagaagaaggtggagtgaaattaaagat
gccatctctcatttttacacttactaatacttgcaagagataacattatccatgatggaa
tagatgttttacgtagatgaaatagaattaatggaattaaggtagtgtgtctaatagatt
gtctaaaattgctaatccagttacaacgagaacttgaaataccccctttccatctataaa
tcaaggttttgggatatactgggtatattacctaggagtttaaatacacataatagattt
ggtcaatgcaaaattatcattatatagaattagagtagactcttctttttgaatcatcag
aagattattgaaaacaaattaattaaaaatgatatcaccttattttaaacatacacttaa
ttaatagctgacagtaagcaaagacttgatttgattaaaaagaatgtgtcttcaagtaat
actcaaagtttgattaagcagaaaagagagttaatagaaaaattattaattcttcctgaa
ttagaacaagaaatataaggtctataaattcttgagtaatggaagttgaattaatcaaac
taggacaatgaagaagattttattctatagatgcctgaagaaacctatgattaaataaag
gcaatcacagataagattgcataaacaaaacaaatatatgaagaatatcacagagtgttg
aataaagtcaaaaatgatgtcataaacttttaaggttttaagaccatttaacaaaataaa
atatatttaacaaatttgtataaaagagtgctctaagaaaagcagagagtgacttagaaa
ttgcctatttattttaaaaaaagggagttgattgatagcatacaataaagtcaggtaatt
cttttgataggagctacaggatcaggtaaatctacataattggtataatatgtatacgaa
gaaattgagttgagagggaaaatcatatgtgtagagccaagaatgatagctgcaagaagt
ttggcaaagagagtagctgaggagatgcataccaagcttggagggagtgttgcttatttg
aatgaatatgattaattagatgatgacaacaagattatatttacttaggatagaataata
ctaaacatcttgcaaaaagatcctcttttaaatgattatgaagttgtgatcatagatgaa
gcacatgaaagaaatatgaatactgatattttacttggattactaaaggatataataaat
aaaaggaaggatcttaaaataataataatgagtgctacgatggatgaagaattatttagt
aattatttttagtgtaaagcatttaaagttgaaggtaagttattcgatgtaaagattaag
tattaaaattcatattcagacaattacatagattaaatctaatcattaatttaaaacaag
ataatttataaggttatgaatcagtcatattaataaagacatgtccttatatttttggca
ggaatagatgaaattcaaaggctactttatttattttaggattattaagatatggatgaa
tttctatttttaggattgcatggtcagatgacataggatgaacaattcgatgttttctaa
gaaactaagaagatcaaaatcattttttctactagagtagctgaaacagctcttacaatt
aatgatgtaagtgttgttattgacatcggagttgatagattcagtgaatacgattaaaaa
agaggaatgcaaattacaaaaattagttggatatcttaagcttaggctaatcaaagagca
ggtagagcaggaagaacgagacaaggaaaatgttatagattatactcggaataggaatat
tagacatagatgtaagaacataagacacctgaaatttagagatgttgtctagatttagtt
gtgttgagaatcaaatcatttaataaagatccatttgaatttgaatttatacaatctcct
aatcgttaagctatgaaaagtagctaagaatacttaatagatatcaaagcactagatgag
caagggaacattacagtcttaggaaagtttatgtcataaatctaaacagagccaagaatg
agtagaatcttaattgaagcctattacaaaaatgtatttagagaaactctctccattatt
tgtgtaatgcttaataatcaatcattgtacttgaaaaacacagatgtttctaataaaata
gaatgtttaaatgaaatgggtgatttctttacttattctagagtttattgggattttaaa
tcactcactaattccaatttaagcaatttccaaataaaatagaaatgtttctaaaaagga
tatcattacaagacattaaaaaattgcgaaaaagcctttgatgaaatggaaaaggctttt
agctattttgatttgtagttgtatgaaaattaagaaataaaaaataaaattctgtggaat
tcagattcaacaagagaagaatgtgtgatgacatgctttttaacagcattctatcctgat
ttatgtgtttataatgggaatccgtatattggatacacatttctgaaatcaaaaagaaat
gtaagaatctatggatctagcactttaagtttgttgaatcatttccctaaatacattata
tgttcagatttgtattcttcaaattactttgatttctgcagagtggcccaagaagtaaaa
ttagagaaactaaaggaaatcttaaaacctagttaaatagaagagattgagaactttgtt
ccagataagtatcaataccaatagctgagaaatgtttcatcctccttattaaatcatcta
atccatacgtttaactaatactcatacgatgaataggaaaaaagattctaatattattgt
aataatgatcaagacaatggaattttcgaaatttggtctttaaaaccaatagatcttgaa
ttttactagaaggattattatgagaaaatgaaaagctatctctattttagactttatgga
taaggcatgcttgtttatttcaaacatggagcatagatacatgttacctagtaatgtact
tcatctgagttagtgatagttcaattttcttcatctccttttaatattgaagaaatccaa
tagattcttgatgaataacatttatactacaataatctgttctagataaatgccaacaga
tttggatattgtggatagatattcactaatagttaagaaattgcctatcaaataacctat
gtcttaaatgaaaaagccaagtacagattggaattataaaattaacaggaataataggaa
agataaaggttgttcactataaaaccaagagaaataagaaatagagtaatcaaatcatct
gtggaattaattttttatggttctgagaataaaggatttggatttattcaatttaaaaat
taagaagaagcagaagaattttttattaaaaccatttccatagtacaatttaaaggaagg
ccgtaggatttgaaaatttattaagatcaaaaatctaaaataagaatatcaaacgtacct
tataatgcaaatgaatatgaattactcagatatttataagatttggctcaataaaagaat
tgtcctaaaccacagtcattgaatttaattggcaaagagtagactgaaactaaggattgg
aaccatgaaatccataaagtatttgaaaagtatactggtgaaaaaccccttcatttagat
attcgatctgataaaaataattataggataatagtgagggtgatgaccactacaaatcca
ataaagttggaggaaatgagaaaacaaatcaactttactaacaatatattagggttctca
tcaataacaatgaaaattgaatataaaataataaaaataatcagtaaaaatatattggta
taaaatgaagaaaaaataaatgatataaaaaaagaattgtaggctaaatattcagaagat
ctattgaaaatattctcatcaggtgaaaatatgattattattggtaagaatccaaatttt
gtaagataagcatctttgatgttgcatggtgttcttaatggatataatttaaaagtcaat
ttgagaaaatatgtctttaagtaggtattaagggataactaattttatcaagatctttta
tcattacaagatttgcatgggtttaaatttaatactaagttattgtaataaggtgcaata
aaagtgtatttaaatcaggattctttaattgaaatttagaatgcaatcaactcaatgatc
aaatagcacgtctcaaataatcttatcgtaaatataagaaattattcctttaaaccatta
ttaactatcaaagacaacattatgtttatgttacaataaaaatacaatgttagcatagac
tttatactttagaaaaaacaaataattatctacggaaacaatgaataagcatagaaatgt
aaagatcatttattgaaatctctatcaaagtctccggaagcttaaaaataagatctttgt
gaaatttgttatggcgaactaactgaaaaatatgtacttgctttatgtaatcactttttc
tgcaaaaactgcctttacgaatccattaaagcataaaataatcccccttataaatgccca
tagcaatcttgtgataatttaataagtctctccgatctttaatagattctttgcgaaata
gaattttctaaattactagattaaagctttaaaagatataaggattaacatgctgatgag
tacataggatgcctaacacctgattgtgaagaattctttaaaaagttaacataaaacaaa
gaataattctattattgctaaagctgtttacaatcattttgtttcttatgtaagcgaaat
gcacatccctaaataagttgtgaagaggctaaaaaattatttattgatggaaaagactta
gatgaatcagaattacttaaaatgaatatcaaaagatgccctaaatgtcaaatgggagtt
cagaaaaatgaaggttgtctccatcttcactgcacaaattgtgaaaaccatttctgttgg
gtctgtttgcattaagctaacttaagtcaagatatttatgcacatttaagaagttaacat
ggaggatatttttaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (109)   
   KEGG ORTHOLOGY (1)   
   RefGene (104)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   GENOSCOPE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (22)   
   Pfam (22)   
All databases (139)   

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