KEGG   Paramecium tetraurelia: GSPATT00032450001
Entry
GSPATT00032450001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K13126  polyadenylate-binding protein
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03015  mRNA surveillance pathway
ptm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    GSPATT00032450001
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSPATT00032450001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptm03019]
    GSPATT00032450001
   03041 Spliceosome [BR:ptm03041]
    GSPATT00032450001
Messenger RNA biogenesis [BR:ptm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     GSPATT00032450001
   mRNA cycle factors
    Stress granule specific factors
     GSPATT00032450001
Spliceosome [BR:ptm03041]
 Complex C
  Other components
   Complex C specific factors
    GSPATT00032450001
SSDB
Motif
Pfam: RRM_1 PABP RRM_3 Nup35_RRM_2 DUF5611 XS
Other DBs
NCBI-GeneID: 5015778
NCBI-ProteinID: XP_001429996
Genoscope: GSPATT00032450001
UniProt: A0BVN1
Position
undetermined
AA seq 517 aa
MIQSTLHDRCVYVTQYKSETTLEQLKQAFSEFGKIEQLQQNAKSNGVFIVFDSHDAVKKA
TSKTVTIEGKNLDVNEYLDMDKLDEEANIFIDGLSPTTTQLQVKEKLQKYGKILNIKVQM
SDKAGVAYIQFEQRKSAEQCLADQANLGLHITRAIKKGKLQQIKRDQLFISNIKSQQPLD
QIKPLLDNYFSEYGKIESIQVNVNPKNQTYFAFVRFENSEDAYKAVKASKTFQNQTITIQ
WAVNSNDNIEANLYTKNLKPTVTEQQLREAYESIVVLDDIQLLPPNKSNKLTAYIYLKSA
EDGKKVIDLAVKTKKIFDLYDKLTVQISPMLSPAEIIQFKKTQQKPAFQPYPQPIPFPYQ
QPFQGYPNYQNPPYGAYPQQPPQYPTGYPPQQPPYQPGFTQQQGNYNPHRPKRNQYSNQQ
SNQYHNQQRPHQPRMPDLQFLQSLQAQGNEKKITAIVGAILFPLVNQQVEQKLAPQVTGI
LLDFENYGLEDQFKMLQDATYLNEQINQAVDLIRKSY
NT seq 1554 nt   +upstreamnt  +downstreamnt
atgatttaatcaactcttcatgataggtgtgtgtatgtaacttagtataagtctgaaact
acccttgaatagttgaaataagcattctctgagttcggaaagatcgaataattatagcaa
aatgccaagtcaaatggagtattcatagtatttgattctcatgatgcagtgaaaaaagca
acatccaagacagtcactatagaaggaaagaacttggatgtcaatgaatacttggatatg
gataaattggatgaagaggcaaatatattcatagatggattaagtcccacaactacccaa
ttgtaagtgaaagagaaattataaaaatatggaaagatcttgaatatcaaagtttagatg
tctgataaggctggagtggcctatatctagtttgagtaaaggaaatccgctgaacaatgt
ctggcagattaggcaaatttgggattgcatatcacaagagcaatcaagaagggtaaacta
taacaaatcaagagagattaactgttcatctctaatatcaagtcctaataacccttggat
caaattaaaccattgttggacaactatttctctgaatatggcaaaattgaatccatctaa
gtcaatgtaaatcccaaaaatcaaacatactttgcatttgttagatttgaaaattcagaa
gatgcatataaagcagtcaaagcttccaaaacattccaaaaccaaactattaccatttaa
tgggctgtcaattcaaatgacaatattgaagctaatctatacaccaaaaaccttaaaccc
acagtcactgaacaataactcagagaagcatatgaatccatcgttgttctagatgatatt
caattattaccaccaaacaaatctaataaattaacagcttatatctatttgaaatctgct
gaagatggtaaaaaagtcattgatttggctgtcaaaactaaaaaaatatttgatctgtat
gataaattgactgtgcaaatctctccaatgttgagtccagcagaaattatccaattcaaa
aaaacacaatagaaaccagccttttaaccttatccttaacccattcccttcccatactaa
taaccattctaaggatatccaaactatcaaaaccctccctatggtgcttatccataataa
ccaccccaatatcctactggttatcctcctcaataacccccttattaaccaggattcact
caataataaggtaattataatccacacagacctaagagaaattaatactcaaatcaataa
tctaatcaatatcataactaacaaagaccacaccaaccaagaatgccagacttgtaattc
ttacaaagtctgtaagcttaaggaaatgagaaaaaaatcactgccatagtaggagcaatc
ctatttcctttagttaaccaataggttgagtaaaaattggcacctcaagtgacaggaatt
ctattagattttgaaaattatggattggaagattaatttaaaatgctttaggatgcaact
tatttgaacgagtaaatcaatcaagctgtagatctaataagaaaatcttattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   GENOSCOPE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (46)   

Download RDF
DBGET integrated database retrieval system