KEGG   Paramecium tetraurelia: GSPATT00034182001
Entry
GSPATT00034182001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSPATT00034182001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ptm03000]
    GSPATT00034182001
   03019 Messenger RNA biogenesis [BR:ptm03019]
    GSPATT00034182001
   04121 Ubiquitin system [BR:ptm04121]
    GSPATT00034182001
Enzymes [BR:ptm01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     GSPATT00034182001
Transcription factors [BR:ptm03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    GSPATT00034182001
Messenger RNA biogenesis [BR:ptm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GSPATT00034182001
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     GSPATT00034182001
Ubiquitin system [BR:ptm04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    GSPATT00034182001
SSDB
Motif
Pfam: RRM_1 Nup35_RRM_2 Torus DDA1
Other DBs
NCBI-GeneID: 5017887
NCBI-ProteinID: XP_001432102
Genoscope: GSPATT00034182001
UniProt: A0C1N8
Position
undetermined
AA seq 295 aa
MQNSDNSDEQYSDDQQESPRFLYNFRELNLQNKSLLGEIRIICRNLIYVIGLAPTLAKEE
LLRKPEYFGQYGQIQKLIVIQSNTFNPPSHAAYITYRNEQEASMAILVSILQQLIGLLVK
ASFGTTKYCTNFLKGQQCKIKDCVYLHQHPKDKESTQVIKKEEMNNSKWLFSYSQRLAQI
NFKKFYTKINYKAALQKSIFLNTQNILDRMIAYKIVDRHLDQPHQQITNEDTSQQFSGKS
VDAISPQKPLDMEKRLEDIIQKMDGDSNSRFKFTTTIKVPEDQEAINQLKQFILK
NT seq 888 nt   +upstreamnt  +downstreamnt
atgcaaaattcggacaattcagatgaatagtatagtgatgatcaataggagtctcctcgg
tttctgtataactttagggaattaaatctgcagaacaaaagtttacttggagaaatacgg
atcatttgcagaaatctcatttatgtgattggtttggctcctactttggccaaagaggaa
ttgctcagaaaaccagaatatttcggataatatggatagatttaaaaattgattgtaatc
tagagcaacaccttcaatccaccttctcatgcagcctacattacatatcgtaatgaacag
gaagcatcaatggccatactagtaagcattttacaataacttatcggcttattggtcaaa
gcctcttttggaaccaccaaatactgtaccaatttcttgaaaggacaacaatgcaaaatc
aaagattgtgtttatttgcactaacacccaaaagataaggaatcaacataagttattaaa
aaagaagaaatgaacaattccaaatggttattctcttactctcaaagattagctcaaatc
aatttcaaaaaattctacaccaaaattaattacaaagctgctctttaaaaatccatcttt
ctgaacacccaaaatatactagaccgaatgatagcctataaaattgtcgatcgtcatttg
gactagcctcattaacaaataaccaatgaggacacttcataatagttctctggtaaatcg
gttgatgctatatccccgtaaaaaccattggatatggagaagagattggaagatatcatt
caaaagatggatggagatagtaattccaggttcaaattcacaactactataaaagttccc
gaagattaagaagcaataaatcaattaaagtagtttattctaaaatga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   GENOSCOPE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (37)   

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