KEGG   Paramecium tetraurelia: PTMB.27c
Entry
PTMB.27c          CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTMB.27c
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptm03019]
    PTMB.27c
Enzymes [BR:ptm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     PTMB.27c
Messenger RNA biogenesis [BR:ptm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PTMB.27c
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     PTMB.27c
SSDB
Motif
Pfam: Exo_endo_phos PHM7_cyt Amdase V-ATPase_H_C
Other DBs
NCBI-GeneID: 2898473
NCBI-ProteinID: XP_001346851
UniProt: Q6BGJ6
Position
MT
AA seq 326 aa
MGQVINSIQKKPSNNLTMQNEYQPEFINFRHAISILSYNILAAIYCDQSQTGYAQNQYLK
FSNRSTKIIEQLKIFNVDIFCLQEVDNIDFYQERIKKLNYEICFVQRPQRPDGCLIAFKV
DKFKLLKSSEYSLDKMAINYGLPLQYQRQNVFQIVILEHILTKKQLVIGNIHTFWNPNQD
DLKYFQIVQLVQKMEAEKESDDQILIFCGDLNSLPHSNPIQYIQKNKPIVERIEKSSNQI
KLQKEIFEHYGPPKLNWQSAYHPFPKFTNYTTDFKGCIDYIFYHNANVEKILRLPEESVL
QQEVALPNRNFPSDHLPILASFDFHF
NT seq 981 nt   +upstreamnt  +downstreamnt
atgggataggtaataaatagtattcaaaagaaacctagtaataatttaacaatgcaaaac
gaatattagccagaattcattaattttagacatgcaatttctatattatcatataacata
ttagccgctatctattgtgaccaatcacagactggttacgctcaaaatcaatacctgaaa
ttttcaaacagaagtactaaaattatcgaataattgaaaattttcaatgttgacatattt
tgccttcaagaggttgacaacattgacttttatcaagagaggatcaagaaactaaattat
gaaatttgctttgtttagagaccttaaagacctgatggatgtttgatcgctttcaaagtc
gataaattcaagttattgaaatcttcagagtactctctcgataagatggccattaattat
gggctacctcttcaataccaaagatagaatgtgttttaaattgtcattctggaacatata
ttaacaaaaaaacagctagtgattggaaacattcataccttctggaatccaaaccaggat
gacttaaaatatttttagattgtccagctagtacaaaagatggaggctgaaaaagaatcc
gatgatcagatactcatattttgtggagatttaaatagtctccctcattctaacccaata
caatacatttaaaaaaataaacccatagttgaaagaatagaaaaatcttcgaaccaaatc
aaactataaaaggagatattcgagcactacggtccacctaagttgaattggcaaagtgct
tatcatccattccccaagtttactaattatacaacagactttaaaggatgtattgattac
attttctatcataatgcaaacgtggaaaagatattgagattgcctgaagaaagtgtgtta
tagcaagaagtagcattacccaacaggaatttccccagtgatcatttgccgattttagca
tcttttgattttcacttttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (72)   
   KEGG ORTHOLOGY (1)   
   RefGene (68)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (83)   

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