KEGG   Pan troglodytes (chimpanzee): 451860
Entry
451860            CDS       T01005                                 
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X3
  KO
K19719  collagen type II alpha
Organism
ptr  Pan troglodytes (chimpanzee)
Pathway
ptr04151  PI3K-Akt signaling pathway
ptr04510  Focal adhesion
ptr04512  ECM-receptor interaction
ptr04974  Protein digestion and absorption
ptr05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:ptr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    451860 (COL2A1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    451860 (COL2A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    451860 (COL2A1)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    451860 (COL2A1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    451860 (COL2A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ptr00536]
    451860 (COL2A1)
Glycosaminoglycan binding proteins [BR:ptr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   451860 (COL2A1)
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 451860
NCBI-ProteinID: XP_001161825
Ensembl: ENSPTRG00000004871
VGNC: 10704
UniProt: H2Q5S8 A0A6D2XVX7
Position
12:41051166..41082931
AA seq 1418 aa
MIRLGALQTLVLLTLLVAAVLRCQGQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAG
EQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDE
KAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPG
KPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG
ESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG
APGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG
APGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEG
KRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG
RPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKG
ANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPG
PPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDG
PKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG
PIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKG
EQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPG
SNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEG
PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG
PAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRG
EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSG
DQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPG
PPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIESI
RSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPA
NVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNI
TYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTV
IEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq 4257 nt   +upstreamnt  +downstreamnt
atgattcgcctcggggctctccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcagggccaggatgtccggcaaccaggaccaaagggacagaaaggagaacct
ggagacatcaaggatattgtaggacccaaaggacctcctgggcctcagggacctgcaggg
gaacaaggacccagaggggatcgtggtgacaaaggtgaaaaaggtgcccctggacctcgt
ggcagagatggagaacctgggacccctggaaatcctggcccccctggtcctcccggcccc
cctggtccccctggtcttggtggaaactttgctgcccagatggctggaggatttgatgaa
aaggctggtggcgcccagttgggagtaatgcaaggaccaatgggccccatgggacctcga
ggacctccaggccctgcaggtgctcctgggcctcaaggatttcaaggcaatcctggtgaa
cctggtgaacctggtgtctctggtcccatgggtccccgtggtcctcctggtccccctgga
aagcctggtgatgatggtgaagctggaaaacctggaaaagctggtgaaaggggtccgcct
ggtcctcagggtgctcgtggtttcccaggaaccccaggccttcctggtgtcaaaggtcac
agaggttatccaggcctggacggtgctaagggagaggcgggtgctcctggtgtgaagggt
gagagtggttccccgggtgagaacggatctccgggcccaatgggtcctcgtggcctgcct
ggtgaaagaggacggactggccctgctggcgctgcgggtgcccgaggcaacgatggtcag
ccaggccccgcagggcctccgggtcctgtcggtcctgctggtggtcctggcttccctggt
gctcctggagccaagggtgaagccggccccactggtgcccgtggtcctgaaggtgctcaa
ggtcctcgcggtgaacctggtactcctgggtcccctgggcctgctggtgcctccggtaac
cctggaacagatggaattcctggagccaaaggatctgctggtgctcctggcattgctggt
gctcctggctttcctgggccacggggccctcctggccctcaaggtgcaactggtcctctg
ggcccgaaaggtcagacgggtgaacctggtattgctggcttcaaaggtgaacaaggcccc
aagggagaacctggccctgctggcccccagggagcccctggacccgctggtgaagaaggc
aagagaggtgcccgtggagagcctggtggcgttgggcccatcggtccccctggagaaaga
ggtgctcccggcaaccgcggtttcccaggtcaagatggtctggcaggtcccaagggagcc
cctggagagcgagggcccagtggtcttgctggccccaagggagccaacggtgaccctggc
cgtcctggagaacctggccttcctggagcccggggtctcactggccgccctggtgatgct
ggtcctcaaggcaaagttggcccttctggagcccctggtgaagacggtcgtcctggacct
ccaggtcctcagggggctcgtgggcagcctggtgtcatgggtttccctggccccaaaggt
gccaacggcgagcctggcaaagctggtgagaagggactgcctggtgctcctggtctgagg
ggtcttcctggcaaagatggtgagacaggtgctgcaggaccccctggccctgctggacct
gctggtgaacgaggcgagcagggtgctcctgggccatctgggttccagggacttcctggc
cctcctggtcccccaggtgaaggtggaaaaccaggtgaccagggtgttcccggtgaagct
ggagcccctggcctcgtgggtcccaggggtgaacgaggtttcccaggtgaacgtggctct
cccggtgcccagggcctccagggtccccgtggcctccccggcactcctggcactgatggt
cccaaaggtgcatctggcccagcaggcccccctggggctcagggccctccaggtcttcag
ggaatgcctggcgagaggggagcagctggtatcgctgggcccaaaggcgacaggggtgac
gttggtgagaaaggccctgagggagcccctggaaaggatggtggacgaggcctgacaggt
cccattggcccccctggcccagctggtgctaacggcgagaagggagaagttggacctcct
ggtcctgcaggaagtgctggtgctcgtggcgctccgggtgaacgtggagagactgggccc
cccggaccagcgggatttgctgggcctcctggtgctgatggccagcctggggccaagggt
gagcaaggagaggccggccagaaaggcgatgctggtgcccctggtcctcagggcccctct
ggagcacctgggcctcagggtcctactggagtgactggtcctaaaggagcccgaggtgcc
caaggccccccgggagccactggattccctggagctgctggccgcgttggacccccaggc
tccaatggcaaccctggaccccctggtccccctggtccttctggaaaagatggtcccaaa
ggtgctcgaggagacagcggtccccctggccgagctggtgaacccggcctccaaggtcct
gctggaccccctggcgagaagggagagcctggagatgacggtccctctggtgctgaaggt
ccaccaggtccccagggtctggctggtcagagaggcatcgtcggtctgcctgggcaacgt
ggtgagagaggattccctggcttgcctggcccatcgggtgagcccggcaagcagggtgct
cctggagcatctggagacagaggtcctcctggccccgtgggtcctcctggcctgacaggt
cctgcaggtgaacctggacgagagggaagccctggtgctgatggcccccctggcagagat
ggcgcggctggagtcaagggtgatcgtggtgagactggtgctgtgggagctcctggagcc
cctgggccccctggctcccctggccccgctggtccaactggcaagcaaggagacagagga
gaagctggtgcacaaggccccatgggaccctcaggaccagctggagcccggggaatccag
ggtcctcaaggccccagaggtgacaaaggagaggctggagagcctggcgagagaggcctg
aagggacaccgtggcttcactggtctgcagggtctgcccggccctcctggtccttctgga
gaccaaggtgcttctggtcctgctggtccttctggccctagaggtcctcctggccccgtc
ggtccctctggcaaagatggtgctaatggaatccctggccccattgggcctcctggtccc
cgtggacgatcaggcgaaaccggccctgctggtcctcctggaaatcctggaccccctggt
cctccaggtccccccggccctggcatcgacatgtccgcctttgctggcttaggcccgaga
gagaagggccccgaccccctgcagtacatgcgggccgaccaggcagccggtggcctgaga
cagcatgacgccgaggtggatgccacactcaagtccctcaacaatcagattgagagcatc
cgcagccccgagggctcccgcaagaaccctgctcgcacctgcagagacctgaaactctgc
caccctgagtggaagagtggagactactggattgaccccaaccaaggctgcaccttggac
gccatgaaggttttctgcaacatggagactggcgagacttgcgtctaccccaacccagca
aacgttcccaagaagaactggtggagcagcaagagcaaggagaagaaacacatctggttt
ggagaaaccatcaatggtggcttccatttcagctatggagatgacaatctggctcccaac
actgccaacgtccagatgaccttcctacgcctgctgtccacggaaggctcccagaacatc
acctaccactgcaagaacagcattgcctatctggacgaagcagctggcaacctcaagaag
gccctgctcatccagggctccaatgacgtggagatccgggcagagggcaatagcaggttc
acgtacactgccctgaaggatggctgcacgaaacacaccggtaagtggggcaagactgtt
atcgagtaccggtcacagaagacctcacgcctccccatcattgacattgcacccatggac
ataggagggcccgagcaggaattcggtgtggacatagggccggtctgcttcttgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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