KEGG   Pan troglodytes (chimpanzee): 452247
Entry
452247            CDS       T01005                                 
Symbol
ATXN2
Name
(RefSeq) ataxin-2 isoform X1
  KO
K23625  ataxin 2/2L
Organism
ptr  Pan troglodytes (chimpanzee)
Pathway
ptr05014  Amyotrophic lateral sclerosis
ptr05017  Spinocerebellar ataxia
ptr05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:ptr00001]
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    452247 (ATXN2)
   05017 Spinocerebellar ataxia
    452247 (ATXN2)
   05022 Pathways of neurodegeneration - multiple diseases
    452247 (ATXN2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptr03019]
    452247 (ATXN2)
Messenger RNA biogenesis [BR:ptr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     452247 (ATXN2)
SSDB
Motif
Pfam: SM-ATX LsmAD PAM2 TFIIA LSM
Other DBs
NCBI-GeneID: 452247
NCBI-ProteinID: XP_016779712
Ensembl: ENSPTRG00000029540
VGNC: 4941
Position
12:complement(109107236..109254899)
AA seq 1391 aa
MRSAAAAPRSPAVATESRRFAAARWPGWRSLQRPARRSGRGGGGAAPGPYPSAAPPPPGP
GPPPSRQSSPPSASDCFGSNGNGGGAFRPGSRRLLGLGGPPRPFVVLLLPLASPGAPPAA
PTRASPLGARASPPRSGVSLARPAPGCPRPACEPVYGPLTMSLKPQQQQQQQQQQQQQQQ
QQQQQQQQQQPPPAAANVRKPGGSGLLASPAAAPSPSSSSVSSSSATAPSSVVAATSGGG
RPGLGRGRNSNKGLPQSTISFDGIYANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYS
PKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYAKRDAFTDSAI
SAKVNGEHKEKDLEPWDAGELTANEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSS
LSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNS
SEREGHSINTRENKYIPPGQRNREVISWGSGRQNSPRMGQPGSGSMPSRSTSHTSDFNPN
SGSDQRVVNGVFILSFISFVLSGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPS
RPPSRPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSG
LEFVSHNPPSEAATPPVARTSPSGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTPSGPV
LASPQAGIIPTEAVAMPIPAASPTPASPASNRAVTPSSEAKDSRLQDQRQNSPAGNKENI
KPNETSPSFSKAENKGISPVVSEHRKQIDDLKKFKNDFRLQPSSTSESMDQLLNKNREGE
KSRDLIKDKIEPSAKDSFIENSSSNCTSGSSKPNSPSISPSILSNTEHKRGPEVTSQGVQ
TSSPACKQEKDDKEEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSP
SMVGHQQPTPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVKYLE
LELLRYVPNMPQQRQDQHHQSAMMHPASAAGPPIAATPPAYSTQYVAYSPQQFPNQPLVQ
HVPHYQSQHPHVYSPVIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAMYACPKLPYN
KETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQH
HQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHV
QPAYTNPPHMAHVPQCASEALARCGLEMRLSWIYLSEGYLAHVQSGMVPSHPTAHAPMML
MTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSGEACVCRGRRGTPKHSARTGGMAG
RASASSPAFEN
NT seq 4176 nt   +upstreamnt  +downstreamnt
atgcgctcagcggccgcagctcctcggagtcccgcggtggccaccgagtctcgccgcttc
gccgcagccaggtggcccgggtggcgctcgctccagcggccggcgcggcggagcgggcgg
ggcggcggtggcgcggccccgggaccgtatccctccgccgcccctcccccgcccggcccc
ggcccccctccctcccggcagagctcgcctccctccgcctcagactgttttggtagcaac
ggcaacggcggcggcgcgtttcggcccggctcccggcggctccttggtctcggcgggcct
ccccgccccttcgtcgtcctccttctccccctcgccagcccgggcgcccctccggccgcg
ccaacccgcgcctccccgctcggcgcccgcgcgtccccgccgcgttccggcgtctccttg
gcgcgcccggctcccggctgtccccgcccggcgtgcgagccggtgtatgggcccctcacc
atgtcgctgaagccccagcagcagcagcagcagcagcagcagcaacaacaacaacaacag
cagcagcaacagcagcagcagcagcagcagccgccgcccgcggctgccaatgtccgcaag
cccggcggcagcggccttctagcgtcgcccgccgccgcgccttcgccgtcctcgtcctcg
gtctcctcgtcctcggccacggctccctcctcggtggtcgcggcgacctccggcggcggg
aggcccggcctgggcagaggtcgaaacagtaacaaaggactgcctcagtctacgatttct
tttgatggaatctatgcaaatatgaggatggttcatatacttacatcagttgttggctcc
aaatgtgaagtacaagtgaaaaatggaggtatatatgaaggagtttttaaaacttacagt
ccgaagtgtgatttggtacttgatgccgcacatgagaaaagtacagaatccagttcgggg
ccgaaacgtgaagaaataatggagagtattttgttcaaatgttcagactttgttgtggta
cagtttaaagatatggactccagttatgcaaaaagagatgcttttactgactctgctatc
agtgctaaagtgaatggcgaacacaaagagaaggacctggagccctgggatgcaggtgaa
ctcacagccaatgaggaacttgaggctttggaaaatgacgtatctaatggatgggatccc
aatgatatgtttcgatataatgaagaaaattatggtgtagtgtctacgtatgatagcagt
ttatcttcgtatacagtgcccttagaaagagataactcagaagaatttttaaaacgggaa
gcaagggcaaaccagttagcagaagaaattgagtcaagtgcccagtacaaagctcgagtg
gccctggaaaatgatgataggagtgaggaagaaaaatacacagcagttcagagaaattcc
agtgaacgtgaggggcacagcataaacactagggaaaataaatatattcctcctggacaa
agaaatagagaagtcatatcctggggaagtgggagacagaattcaccgcgtatgggccag
cctggatcgggctccatgccatcaagatccacttctcacacttcagatttcaacccgaat
tctggttcagaccaaagagtagttaatggagtttttatactttccttcatatcatttgtt
ctgtcaggtgttccctggccatcgccttgcccatctccttcctctcgcccaccttctcgc
taccagtcaggtcccaactctcttccacctcgggcagccacccctacacggccgccctcc
aggcccccctcgcggccatccagacccccgtctcacccctctgctcatggttctccagct
cctgtctctactatgcctaaacgcatgtcttcagaagggcctccaaggatgtccccaaag
gcccagcgacatcctcgaaatcacagagtttctgctgggaggggttccatatccagtggc
ctagaatttgtatcccacaacccacccagtgaagcagctactcctccagtagcaaggacc
agtccctcggggggaacgtggtcatcagtggtcagtggggttccaagattatcccctaaa
actcatagacccaggtctcccagacagaacagtattggaaatacccccagtgggccagtt
cttgcttctccccaagctggtattattccaactgaagctgttgccatgcctattccagct
gcatctcctacgcctgctagtcctgcatcgaacagagctgttaccccttctagtgaggct
aaagattccaggcttcaagatcagaggcagaactctcctgcagggaataaagaaaatatt
aaacccaatgaaacatcacctagcttctcaaaagctgaaaacaaaggtatatcaccagtt
gtttctgaacatagaaaacagattgatgatttaaagaaatttaagaatgattttaggtta
cagccaagttctacttctgaatctatggatcaactactaaacaaaaatagagagggagaa
aaatcaagagatttgatcaaagacaaaattgaaccaagtgctaaggattctttcattgaa
aatagcagcagcaactgtaccagtggcagcagcaagccgaatagccccagcatttcccct
tcaatacttagtaacacggagcacaagaggggacctgaggtcacttcccaaggggttcag
acttccagcccagcatgtaaacaagagaaagatgataaggaagagaagaaagacgcagct
gagcaagttaggaaatcaacattgaatcccaatgcaaaggagttcaacccacgttccttc
tctcagccaaagccttctactaccccaacttcacctcggcctcaagcacaacctagccca
tctatggtgggtcatcaacagccaactccagtttatactcagcctgtttgttttgcacca
aatatgatgtatccagtcccagtgagcccaggcgtgcaacctttatacccaatacctatg
acgcccatgccagtgaatcaagccaagacatatagagcaggtaaagttaaatacctagaa
ttggaattgctgaggtatgtaccaaatatgccccaacagcggcaagaccagcatcatcag
agtgccatgatgcacccagcgtcagcagcgggcccaccgattgcagccaccccaccagct
tactccacgcaatatgttgcctacagtcctcagcagttcccaaatcagccccttgttcag
catgtgccacattatcagtctcagcatcctcatgtctatagtcctgtaatacagggtaat
gctagaatgatggcaccaccaacacacgcccagcctggtttagtatcttcttcggcaact
cagtacggggctcatgagcagacgcatgcgatgtatgcatgtcccaaattaccatacaac
aaggagacaagcccttctttctactttgccatttccacgggctcccttgctcagcagtat
gcgcaccctaacgctaccctgcacccacatactccacaccctcagccttcagctaccccc
actggacagcagcaaagccaacatggtggaagtcatcctgcacccagtcctgttcagcac
catcagcaccaggccgcccaggctctccatctggccagtccacagcagcagtcagccatt
taccacgcggggcttgcgccaactccaccctccatgacacctgcctccaacacgcagtcg
ccacagaatagtttcccagcagcacaacagaccgtctttacgatccatccttctcacgtt
cagccggcgtataccaacccaccccacatggcccacgtacctcagtgcgccagtgaggct
ctggcaaggtgtgggctagagatgcgactcagttggatctatctctcagaaggctacctt
gctcatgtacagtcaggaatggttccttctcatccaactgcccatgcgccaatgatgcta
atgacgacacagccacccggcggtccccaggccgccctcgctcaaagtgcactacagccc
attccagtctcgacaacagcgcatttcccctatatgacgcacccttcaggtgaggcgtgt
gtgtgcaggggccgccggggcaccccaaagcattctgctcgcacaggtggaatggcaggc
agggccagtgcttcaagccccgcatttgagaactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (94)   
   KEGG ORTHOLOGY (1)   
   RefGene (88)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (50)   
   RefSeq(pep) (50)   
DNA sequence (54)   
   RefSeq(nuc) (50)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (209)   

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